Cow genome map

Conread name: Tra1-TCH01G050069

Conread position: 13-783
Cow position: chr6:15476937-15477725 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 10

Conread position: 13-819
Cow position: chr6:66541652-66542500 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 7

Conread position: 20-313
Cow position: chr6:42616496-42616792 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 156, 46

Conread position: 24-740
Cow position: chr6:7179234-7178505 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 12

Conread position: 28-545
Cow position: chr6:35419776-35419284 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 66

Conread position: 30-376
Cow position: chr6:6476118-6475765 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 248
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 65, 138

Conread position: 30-669
Cow position: chr6:10643586-10644225 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 223

Conread position: 44-493
Cow position: chr6:33995267-33994816 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 41

Conread position: 89-852
Cow position: chr6:38901067-38900293 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 93-633
Cow position: chr6:1100077-1099532 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 29

Conread position: 107-902
Cow position: chr6:8021043-8021812 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 127

Conread position: 116-436
Cow position: chr6:17245418-17245102 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 13

Conread position: 117-659
Cow position: chr6:60169034-60168515 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 339
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 155, 29

Conread position: 149-664
Cow position: chr6:31566039-31565510 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 350
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 40, 18

Conread position: 162-710
Cow position: chr6:44550918-44550358 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 184

Conread position: 168-894
Cow position: chr6:1822445-1821702 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 5

Conread position: 187-426
Cow position: chr6:43607492-43607259 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 26

Conread position: 197-760
Cow position: chr6:65841801-65842369 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 46

Conread position: 198-903
Cow position: chr6:40554364-40553643 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 31

Conread position: 206-611
Cow position: chr6:36526273-36526679 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 35

Conread position: 206-901
Cow position: chr6:47042972-47042271 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 9

Conread position: 215-610
Cow position: chr6:39437781-39438172 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 26

Conread position: 215-611
Cow position: chr6:30274945-30274550 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 28

Conread position: 216-423
Cow position: chr6:4508192-4507984 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 139, 128

Conread position: 216-903
Cow position: chr6:30479332-30480034 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 132

Conread position: 220-362
Cow position: chr6:702189-702330 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 134, 21

Conread position: 220-493
Cow position: chr6:25214493-25214766 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 30

Conread position: 220-533
Cow position: chr6:8201976-8202292 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-593
Cow position: chr6:15280313-15279947 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 21

Conread position: 220-596
Cow position: chr6:28063567-28063947 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 220-660
Cow position: chr6:29311730-29312174 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 21

Conread position: 220-669
Cow position: chr6:34892767-34892314 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 21

Conread position: 220-901
Cow position: chr6:8761066-8760360 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-903
Cow position: chr6:5949540-5948844 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-903
Cow position: chr6:15140941-15140244 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 21

Conread position: 220-903
Cow position: chr6:20560873-20560169 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-903
Cow position: chr6:24239304-24239986 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 21

Conread position: 221-544
Cow position: chr6:55544087-55543759 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 20

Conread position: 221-733
Cow position: chr6:24323149-24322623 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 125

Conread position: 221-735
Cow position: chr6:69221978-69221450 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 125

Conread position: 221-889
Cow position: chr6:65928202-65928879 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 222-361
Cow position: chr6:913893-914032 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 129, 121

Conread position: 222-589
Cow position: chr6:58026993-58027358 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 19

Conread position: 222-600
Cow position: chr6:3277710-3277340 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 222-618
Cow position: chr6:40867321-40866926 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 19

Conread position: 222-629
Cow position: chr6:13317265-13316859 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 81

Conread position: 222-901
Cow position: chr6:17046294-17046982 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 222-903
Cow position: chr6:35876478-35875783 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 202

Conread position: 223-339
Cow position: chr6:33389083-33389200 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 223-339
Cow position: chr6:59919044-59918928 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 223-369
Cow position: chr6:19454156-19454302 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 121

Conread position: 223-669
Cow position: chr6:17598045-17597605 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 108

Conread position: 223-751
Cow position: chr6:39908761-39909300 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-901
Cow position: chr6:52693264-52693946 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-903
Cow position: chr6:13104292-13104991 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 120

Conread position: 223-903
Cow position: chr6:13944141-13944840 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 118

Conread position: 223-903
Cow position: chr6:43617949-43618649 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 224-602
Cow position: chr6:64715471-64715848 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 123

Conread position: 224-894
Cow position: chr6:6566847-6567513 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 116

Conread position: 225-480
Cow position: chr6:3544726-3544983 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 132, 118

Conread position: 230-860
Cow position: chr6:28275225-28275867 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 11

Conread position: 231-902
Cow position: chr6:331224-330536 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 115

Conread position: 235-386
Cow position: chr6:28491269-28491116 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 113

Conread position: 235-609
Cow position: chr6:65821881-65821500 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 109

Conread position: 235-735
Cow position: chr6:10499479-10498964 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 112

Conread position: 235-894
Cow position: chr6:16052124-16052802 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 109

Conread position: 235-894
Cow position: chr6:27169826-27170497 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 109

Conread position: 235-903
Cow position: chr6:2374945-2375631 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 110

Conread position: 235-903
Cow position: chr6:40251908-40252592 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 56

Conread position: 235-903
Cow position: chr6:40275333-40276020 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 109

Conread position: 240-903
Cow position: chr6:13847276-13847960 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 183

Conread position: 241-601
Cow position: chr6:68027044-68027407 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 59

Conread position: 241-611
Cow position: chr6:1411688-1411316 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 42

Conread position: 241-903
Cow position: chr6:44150304-44149623 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 245-737
Cow position: chr6:65914458-65914959 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 48

Conread position: 246-874
Cow position: chr6:10631315-10631946 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 128

Conread position: 246-901
Cow position: chr6:51086203-51086873 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 97

Conread position: 246-903
Cow position: chr6:28105590-28104929 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 57

Conread position: 256-569
Cow position: chr6:14852310-14851992 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 166

Conread position: 260-848
Cow position: chr6:3889209-3888620 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 88

Conread position: 261-894
Cow position: chr6:12666041-12665397 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 78

Conread position: 265-899
Cow position: chr6:40315666-40316311 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 78

Conread position: 269-546
Cow position: chr6:25794056-25794335 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 5

Conread position: 269-903
Cow position: chr6:27470885-27471532 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 5

Conread position: 274-891
Cow position: chr6:44032077-44032711 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 69

Conread position: 274-901
Cow position: chr6:43793425-43792787 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 65

Conread position: 281-894
Cow position: chr6:26670575-26669943 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 65

Conread position: 282-493
Cow position: chr6:41656986-41656778 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 64

Show alignments to all cow chromosomes.