Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 5-901 |
| Cow position: | chr7:51014381-51015286 (view UCSC Genome Browser custom track) |
| Alignm length: | 929 |
| Alignm identity: | 679 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 13-611 |
| Cow position: | chr7:27560436-27559878 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 407 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 134, 28 |
| Conread position: | 13-711 |
| Cow position: | chr7:67812683-67813379 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 448 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 176, 15 |
| Conread position: | 28-664 |
| Cow position: | chr7:58377632-58377003 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 66 |
| Conread position: | 29-611 |
| Cow position: | chr7:29370130-29369575 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 37 |
| Conread position: | 29-901 |
| Cow position: | chr7:29470587-29471480 (view UCSC Genome Browser custom track) |
| Alignm length: | 912 |
| Alignm identity: | 672 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 65 |
| Conread position: | 30-266 |
| Cow position: | chr7:53991215-53991432 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 55 |
| Conread position: | 30-327 |
| Cow position: | chr7:3155245-3155551 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 30-525 |
| Cow position: | chr7:4415507-4416010 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 64 |
| Conread position: | 30-659 |
| Cow position: | chr7:68908457-68909083 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 31-903 |
| Cow position: | chr7:58993727-58994617 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 63 |
| Conread position: | 36-362 |
| Cow position: | chr7:39107780-39107450 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 84, 58 |
| Conread position: | 61-282 |
| Cow position: | chr7:6488295-6488079 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 65-378 |
| Cow position: | chr7:55280154-55279859 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 292, 29 |
| Conread position: | 93-356 |
| Cow position: | chr7:1734595-1734327 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 189 |
| Conread position: | 108-361 |
| Cow position: | chr7:63550103-63549842 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 181 |
| Conread position: | 113-537 |
| Cow position: | chr7:21310720-21311127 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 117-535 |
| Cow position: | chr7:1404373-1403961 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 54 |
| Conread position: | 124-321 |
| Cow position: | chr7:49291853-49292041 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 124-368 |
| Cow position: | chr7:54644282-54644040 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 140-893 |
| Cow position: | chr7:41876021-41875265 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 147-550 |
| Cow position: | chr7:63951163-63950764 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 152-432 |
| Cow position: | chr7:59683537-59683811 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 162-768 |
| Cow position: | chr7:26851935-26852559 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 199-903 |
| Cow position: | chr7:8144935-8144209 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 17 |
| Conread position: | 199-903 |
| Cow position: | chr7:21127354-21126638 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 215-481 |
| Cow position: | chr7:19924503-19924235 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 35 |
| Conread position: | 215-903 |
| Cow position: | chr7:39792079-39792794 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 215-903 |
| Cow position: | chr7:45948828-45948120 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 220-575 |
| Cow position: | chr7:34149427-34149786 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-578 |
| Cow position: | chr7:13537255-13536900 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 21 |
| Conread position: | 220-617 |
| Cow position: | chr7:20821036-20821426 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 220-894 |
| Cow position: | chr7:33405913-33405229 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-901 |
| Cow position: | chr7:55537592-55536903 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-903 |
| Cow position: | chr7:1372323-1371622 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 220-903 |
| Cow position: | chr7:14139272-14138572 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-903 |
| Cow position: | chr7:21234683-21233986 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 33 |
| Conread position: | 221-425 |
| Cow position: | chr7:43830703-43830498 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 136, 125 |
| Conread position: | 221-623 |
| Cow position: | chr7:60463471-60463878 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 221-784 |
| Cow position: | chr7:61559535-61560112 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 222-337 |
| Cow position: | chr7:1610881-1610766 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 222-438 |
| Cow position: | chr7:54603182-54603397 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 222-622 |
| Cow position: | chr7:68232268-68232658 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 78 |
| Conread position: | 222-633 |
| Cow position: | chr7:446300-445890 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 28 |
| Conread position: | 222-889 |
| Cow position: | chr7:46901750-46901072 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 19 |
| Conread position: | 222-901 |
| Cow position: | chr7:10431087-10430402 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 222-901 |
| Cow position: | chr7:67799181-67799846 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 222-903 |
| Cow position: | chr7:24808135-24807433 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 222-903 |
| Cow position: | chr7:34486245-34486940 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 223-542 |
| Cow position: | chr7:5183736-5184052 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-611 |
| Cow position: | chr7:5662704-5663082 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 223-711 |
| Cow position: | chr7:21320478-21320982 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 223-894 |
| Cow position: | chr7:11446880-11447572 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 223-903 |
| Cow position: | chr7:7257517-7258197 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 123 |
| Conread position: | 223-903 |
| Cow position: | chr7:21929473-21930163 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 70 |
| Conread position: | 223-903 |
| Cow position: | chr7:27786951-27787655 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 209 |
| Conread position: | 225-893 |
| Cow position: | chr7:27584394-27583706 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 231-559 |
| Cow position: | chr7:3234353-3234022 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 235-894 |
| Cow position: | chr7:20515437-20514763 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 235-903 |
| Cow position: | chr7:16537-15850 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 235-903 |
| Cow position: | chr7:3300821-3300132 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 236-603 |
| Cow position: | chr7:54195441-54195086 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 241-837 |
| Cow position: | chr7:61808574-61809188 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 241-903 |
| Cow position: | chr7:6648314-6647633 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 241-903 |
| Cow position: | chr7:20799104-20798418 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 241-903 |
| Cow position: | chr7:25439852-25440527 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 244-496 |
| Cow position: | chr7:38536749-38537002 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 99 |
| Conread position: | 246-782 |
| Cow position: | chr7:25250451-25251003 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 178 |
| Conread position: | 246-894 |
| Cow position: | chr7:65811194-65811845 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 248-496 |
| Cow position: | chr7:65338914-65338682 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 169, 88 |
| Conread position: | 255-901 |
| Cow position: | chr7:994879-995537 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 88 |
| Conread position: | 260-650 |
| Cow position: | chr7:1450737-1451114 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 84 |
| Conread position: | 261-740 |
| Cow position: | chr7:27127706-27128181 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 274-508 |
| Cow position: | chr7:53991582-53991822 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 49 |
| Conread position: | 274-899 |
| Cow position: | chr7:60794927-60794281 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 72 |
| Conread position: | 275-508 |
| Cow position: | chr7:30302966-30303194 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 68 |
| Conread position: | 277-901 |
| Cow position: | chr7:68480938-68481566 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 281-601 |
| Cow position: | chr7:11466389-11466074 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 283-903 |
| Cow position: | chr7:63386124-63386752 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 288-669 |
| Cow position: | chr7:6489582-6489968 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 76 |
Show alignments to all cow chromosomes.