Cow genome map

Conread name: Tra1-TCH01G050069

Conread position: 28-468
Cow position: chr9:7012698-7013122 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 304
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 147, 55

Conread position: 30-268
Cow position: chr9:34721448-34721689 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 154, 46

Conread position: 30-632
Cow position: chr9:28688069-28688681 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 49

Conread position: 30-776
Cow position: chr9:3803307-3804076 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 65

Conread position: 30-901
Cow position: chr9:44818170-44819007 (view UCSC Genome Browser custom track)
Alignm length: 891
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 63

Conread position: 31-339
Cow position: chr9:2001032-2000716 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 61

Conread position: 31-901
Cow position: chr9:9705528-9706402 (view UCSC Genome Browser custom track)
Alignm length: 900
Alignm identity: 626
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 65

Conread position: 37-894
Cow position: chr9:64119216-64120066 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 48

Conread position: 38-277
Cow position: chr9:44795053-44795294 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 150, 0

Conread position: 61-611
Cow position: chr9:59511390-59511945 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 41

Conread position: 70-264
Cow position: chr9:43663577-43663768 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 32

Conread position: 70-447
Cow position: chr9:3354666-3354290 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 24

Conread position: 73-296
Cow position: chr9:6110537-6110311 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 115, 17

Conread position: 104-777
Cow position: chr9:59425806-59426505 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 126

Conread position: 104-861
Cow position: chr9:30487600-30488388 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 24

Conread position: 105-608
Cow position: chr9:13476841-13476326 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 105-901
Cow position: chr9:52291461-52292267 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 142

Conread position: 108-391
Cow position: chr9:63854626-63854915 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 41

Conread position: 110-729
Cow position: chr9:29328716-29329341 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 132

Conread position: 117-759
Cow position: chr9:4281829-4282487 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 21

Conread position: 117-891
Cow position: chr9:3937362-3936584 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 180

Conread position: 142-901
Cow position: chr9:20309059-20308288 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 13

Conread position: 149-608
Cow position: chr9:42556008-42556482 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 192

Conread position: 151-677
Cow position: chr9:7091082-7091616 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 353
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 26, 16

Conread position: 156-631
Cow position: chr9:60464526-60464059 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 87

Conread position: 168-368
Cow position: chr9:37129421-37129234 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 68, 5

Conread position: 168-629
Cow position: chr9:1980103-1980564 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 5

Conread position: 185-467
Cow position: chr9:12061688-12061976 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 198
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 28, 13

Conread position: 194-903
Cow position: chr9:42569039-42569766 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 151

Conread position: 203-903
Cow position: chr9:3566704-3565983 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 231

Conread position: 207-891
Cow position: chr9:47002344-47003042 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 34

Conread position: 207-901
Cow position: chr9:30672520-30673226 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 35

Conread position: 207-903
Cow position: chr9:18509648-18508950 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 34

Conread position: 212-356
Cow position: chr9:34242449-34242304 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 133

Conread position: 215-901
Cow position: chr9:29028038-29027351 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 26

Conread position: 215-901
Cow position: chr9:60277859-60277155 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 26

Conread position: 218-894
Cow position: chr9:59536260-59536949 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 126

Conread position: 220-901
Cow position: chr9:4532659-4533351 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-901
Cow position: chr9:9013266-9013954 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 21

Conread position: 220-901
Cow position: chr9:16175935-16176629 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-901
Cow position: chr9:27034848-27035542 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 21

Conread position: 220-902
Cow position: chr9:10321976-10322665 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-902
Cow position: chr9:37971043-37970335 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 21

Conread position: 220-903
Cow position: chr9:5004162-5004834 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 12

Conread position: 220-903
Cow position: chr9:29628579-29627890 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-903
Cow position: chr9:51182026-51181321 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 21

Conread position: 221-528
Cow position: chr9:49177666-49177354 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 125

Conread position: 221-611
Cow position: chr9:31064594-31064989 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 120

Conread position: 221-669
Cow position: chr9:64018300-64017847 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 125

Conread position: 221-901
Cow position: chr9:37162645-37161953 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 110

Conread position: 221-903
Cow position: chr9:42309850-42310543 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 20

Conread position: 221-903
Cow position: chr9:51210843-51211543 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 222-493
Cow position: chr9:25023131-25022863 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 19

Conread position: 222-523
Cow position: chr9:6050879-6050576 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 136, 19

Conread position: 222-537
Cow position: chr9:7002952-7003271 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 222-669
Cow position: chr9:6830340-6829895 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 222-782
Cow position: chr9:59444020-59444579 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 17

Conread position: 222-903
Cow position: chr9:22653735-22654435 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 200

Conread position: 222-903
Cow position: chr9:59173991-59173285 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 207

Conread position: 223-369
Cow position: chr9:10315537-10315679 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 33

Conread position: 223-454
Cow position: chr9:25484034-25484266 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 131, 120

Conread position: 223-457
Cow position: chr9:60651549-60651314 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 131, 120

Conread position: 223-537
Cow position: chr9:2186136-2186445 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 30

Conread position: 223-642
Cow position: chr9:25035682-25035258 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 123

Conread position: 223-891
Cow position: chr9:222363-221679 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 108

Conread position: 223-894
Cow position: chr9:28678136-28678822 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-894
Cow position: chr9:45873510-45874186 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 118

Conread position: 223-901
Cow position: chr9:131026-130330 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 119

Conread position: 223-903
Cow position: chr9:17064220-17063526 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 31

Conread position: 224-436
Cow position: chr9:1995743-1995531 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 128, 50

Conread position: 224-903
Cow position: chr9:7061922-7061220 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 17

Conread position: 234-793
Cow position: chr9:2487956-2487359 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 143

Conread position: 234-889
Cow position: chr9:3006070-3005404 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 112

Conread position: 235-491
Cow position: chr9:25755049-25754792 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 112

Conread position: 235-664
Cow position: chr9:27934263-27934697 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 45

Conread position: 235-889
Cow position: chr9:36724676-36725347 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 109

Conread position: 235-903
Cow position: chr9:780630-779947 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 112

Conread position: 241-425
Cow position: chr9:163322-163137 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 115, 105

Conread position: 241-481
Cow position: chr9:16268553-16268794 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 102

Conread position: 244-848
Cow position: chr9:30826866-30827482 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 72

Conread position: 244-894
Cow position: chr9:1076013-1075365 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 102

Conread position: 244-901
Cow position: chr9:1251810-1251138 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 11

Conread position: 247-899
Cow position: chr9:28439996-28440665 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 96

Conread position: 270-629
Cow position: chr9:59455051-59454691 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 77

Conread position: 274-465
Cow position: chr9:6974941-6975133 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 61, 38

Conread position: 274-467
Cow position: chr9:21381081-21380888 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 69, 78

Conread position: 274-894
Cow position: chr9:50790928-50791564 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 69

Conread position: 275-669
Cow position: chr9:3543060-3543460 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 68

Conread position: 310-611
Cow position: chr9:44795528-44795820 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 31

Show alignments to all cow chromosomes.