Cow genome map


           Conread name:
           Tra1-TCH01G050069
        

               Conread position:
               28-468
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               147, 55
               

               Conread position:
               30-268
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               154, 46
               

               Conread position:
               30-632
               

               Cow position:
               
               

               Alignm length:
               627
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 49
               

               Conread position:
               30-776
               

               Cow position:
               
               

               Alignm length:
               780
               

               Alignm identity:
               581
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               30-901
               

               Cow position:
               
               

               Alignm length:
               891
               

               Alignm identity:
               646
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 63
               

               Conread position:
               31-339
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 61
               

               Conread position:
               31-901
               

               Cow position:
               
               

               Alignm length:
               900
               

               Alignm identity:
               626
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 65
               

               Conread position:
               37-894
               

               Cow position:
               
               

               Alignm length:
               884
               

               Alignm identity:
               613
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 48
               

               Conread position:
               38-277
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               61-611
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 41
               

               Conread position:
               70-264
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               102, 32
               

               Conread position:
               70-447
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 24
               

               Conread position:
               73-296
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               115, 17
               

               Conread position:
               104-777
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 126
               

               Conread position:
               104-861
               

               Cow position:
               
               

               Alignm length:
               798
               

               Alignm identity:
               545
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 24
               

               Conread position:
               105-608
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 44
               

               Conread position:
               105-901
               

               Cow position:
               
               

               Alignm length:
               829
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 142
               

               Conread position:
               108-391
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               76, 41
               

               Conread position:
               110-729
               

               Cow position:
               
               

               Alignm length:
               642
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 132
               

               Conread position:
               117-759
               

               Cow position:
               
               

               Alignm length:
               666
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               117-891
               

               Cow position:
               
               

               Alignm length:
               807
               

               Alignm identity:
               532
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 180
               

               Conread position:
               142-901
               

               Cow position:
               
               

               Alignm length:
               789
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 13
               

               Conread position:
               149-608
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 192
               

               Conread position:
               151-677
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               353
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               26, 16
               

               Conread position:
               156-631
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 87
               

               Conread position:
               168-368
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               68, 5
               

               Conread position:
               168-629
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 5
               

               Conread position:
               185-467
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               194-903
               

               Cow position:
               
               

               Alignm length:
               735
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 151
               

               Conread position:
               203-903
               

               Cow position:
               
               

               Alignm length:
               727
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 231
               

               Conread position:
               207-891
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               531
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 34
               

               Conread position:
               207-901
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 35
               

               Conread position:
               207-903
               

               Cow position:
               
               

               Alignm length:
               709
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 34
               

               Conread position:
               212-356
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               24, 133
               

               Conread position:
               215-901
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 26
               

               Conread position:
               215-901
               

               Cow position:
               
               

               Alignm length:
               709
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 26
               

               Conread position:
               218-894
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 126
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               701
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 21
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               699
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 21
               

               Conread position:
               220-902
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               220-902
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               545
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 21
               

               Conread position:
               220-903
               

               Cow position:
               
               

               Alignm length:
               705
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 12
               

               Conread position:
               220-903
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 21
               

               Conread position:
               220-903
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 21
               

               Conread position:
               221-528
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 125
               

               Conread position:
               221-611
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 120
               

               Conread position:
               221-669
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 125
               

               Conread position:
               221-901
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 110
               

               Conread position:
               221-903
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               221-903
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               532
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 122
               

               Conread position:
               222-493
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 19
               

               Conread position:
               222-523
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               136, 19
               

               Conread position:
               222-537
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 19
               

               Conread position:
               222-669
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 19
               

               Conread position:
               222-782
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 17
               

               Conread position:
               222-903
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 200
               

               Conread position:
               222-903
               

               Cow position:
               
               

               Alignm length:
               711
               

               Alignm identity:
               529
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 207
               

               Conread position:
               223-369
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               13, 33
               

               Conread position:
               223-454
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               131, 120
               

               Conread position:
               223-457
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               131, 120
               

               Conread position:
               223-537
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               98, 30
               

               Conread position:
               223-642
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 123
               

               Conread position:
               223-891
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 108
               

               Conread position:
               223-894
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 120
               

               Conread position:
               223-894
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 118
               

               Conread position:
               223-901
               

               Cow position:
               
               

               Alignm length:
               701
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 119
               

               Conread position:
               223-903
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 31
               

               Conread position:
               224-436
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               128, 50
               

               Conread position:
               224-903
               

               Cow position:
               
               

               Alignm length:
               712
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 17
               

               Conread position:
               234-793
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 143
               

               Conread position:
               234-889
               

               Cow position:
               
               

               Alignm length:
               673
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 112
               

               Conread position:
               235-491
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 112
               

               Conread position:
               235-664
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 45
               

               Conread position:
               235-889
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               235-903
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 112
               

               Conread position:
               241-425
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               115, 105
               

               Conread position:
               241-481
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 102
               

               Conread position:
               244-848
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 72
               

               Conread position:
               244-894
               

               Cow position:
               
               

               Alignm length:
               665
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 102
               

               Conread position:
               244-901
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 11
               

               Conread position:
               247-899
               

               Cow position:
               
               

               Alignm length:
               673
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 96
               

               Conread position:
               270-629
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 77
               

               Conread position:
               274-465
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               61, 38
               

               Conread position:
               274-467
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               69, 78
               

               Conread position:
               274-894
               

               Cow position:
               
               

               Alignm length:
               640
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 69
               

               Conread position:
               275-669
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 68
               

               Conread position:
               310-611
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 31
               
Show alignments to all cow chromosomes.