Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 15-386 |
| Cow position: | chr10:24978131-24977769 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 19-613 |
| Cow position: | chr10:20371959-20371377 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 23-336 |
| Cow position: | chr10:19496277-19495963 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-371 |
| Cow position: | chr10:21400662-21400314 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 26-446 |
| Cow position: | chr10:14859988-14860397 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 26-450 |
| Cow position: | chr10:34318279-34317863 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 190 |
| Conread position: | 26-472 |
| Cow position: | chr10:49310518-49310945 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 26-482 |
| Cow position: | chr10:15862124-15861664 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 26-488 |
| Cow position: | chr10:46191378-46191826 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 26-528 |
| Cow position: | chr10:21901194-21900703 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 26-529 |
| Cow position: | chr10:3543567-3543083 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 22 |
| Conread position: | 26-543 |
| Cow position: | chr10:40751663-40752174 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 26-544 |
| Cow position: | chr10:24298842-24298321 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 249 |
| Conread position: | 26-566 |
| Cow position: | chr10:38847376-38847903 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 26-773 |
| Cow position: | chr10:32064158-32064915 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 260 |
| Conread position: | 27-336 |
| Cow position: | chr10:14803848-14804159 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 27-336 |
| Cow position: | chr10:47906790-47907101 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-372 |
| Cow position: | chr10:39179796-39180147 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 247 |
| Conread position: | 30-331 |
| Cow position: | chr10:62408839-62408539 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 30-336 |
| Cow position: | chr10:40152438-40152131 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 126 |
| Conread position: | 30-339 |
| Cow position: | chr10:34685910-34686220 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 30-341 |
| Cow position: | chr10:25359415-25359727 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-350 |
| Cow position: | chr10:8289999-8290315 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 169 |
| Conread position: | 30-350 |
| Cow position: | chr10:16925551-16925872 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 236 |
| Conread position: | 30-351 |
| Cow position: | chr10:21486930-21487253 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 246 |
| Conread position: | 30-351 |
| Cow position: | chr10:38345346-38345024 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 245 |
| Conread position: | 30-372 |
| Cow position: | chr10:124326-124669 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-372 |
| Cow position: | chr10:37769839-37770181 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 30-372 |
| Cow position: | chr10:39041284-39040942 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 30-372 |
| Cow position: | chr10:62778362-62778707 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 30-400 |
| Cow position: | chr10:4192201-4191835 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 213, 67 |
| Conread position: | 37-414 |
| Cow position: | chr10:38546201-38545825 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 47 |
| Conread position: | 40-351 |
| Cow position: | chr10:32650759-32651071 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 40-371 |
| Cow position: | chr10:41567133-41567459 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 128 |
| Conread position: | 41-336 |
| Cow position: | chr10:39817338-39817040 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 235 |
| Conread position: | 41-340 |
| Cow position: | chr10:32578315-32578615 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 234 |
| Conread position: | 41-341 |
| Cow position: | chr10:51952593-51952294 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 203 |
| Conread position: | 41-371 |
| Cow position: | chr10:25565233-25564901 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 235 |
| Conread position: | 42-336 |
| Cow position: | chr10:41157476-41157770 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 138 |
| Conread position: | 42-372 |
| Cow position: | chr10:19511634-19511965 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 233 |
| Conread position: | 42-426 |
| Cow position: | chr10:53363982-53364371 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 44-351 |
| Cow position: | chr10:1375558-1375871 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 236 |
| Conread position: | 45-327 |
| Cow position: | chr10:7282654-7282373 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 98 |
| Conread position: | 45-341 |
| Cow position: | chr10:10581823-10582131 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 84 |
| Conread position: | 45-382 |
| Cow position: | chr10:14951917-14952239 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 18 |
| Conread position: | 45-485 |
| Cow position: | chr10:63841326-63841776 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 45-490 |
| Cow position: | chr10:10415437-10415861 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 46-336 |
| Cow position: | chr10:10478122-10477813 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 67, 247 |
| Conread position: | 51-352 |
| Cow position: | chr10:19758388-19758690 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 139 |
| Conread position: | 52-764 |
| Cow position: | chr10:33346639-33347356 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 60-336 |
| Cow position: | chr10:11685625-11685348 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 214 |
| Conread position: | 64-340 |
| Cow position: | chr10:13365820-13365543 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 79-614 |
| Cow position: | chr10:8328209-8327672 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 181 |
| Conread position: | 99-367 |
| Cow position: | chr10:42748215-42748478 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 126 |
| Conread position: | 122-442 |
| Cow position: | chr10:42628731-42629051 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 152 |
| Conread position: | 129-442 |
| Cow position: | chr10:31523915-31524226 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 56 |
| Conread position: | 129-498 |
| Cow position: | chr10:31537382-31537739 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 156, 125 |
| Conread position: | 136-352 |
| Cow position: | chr10:19802679-19802895 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 147-772 |
| Cow position: | chr10:60192265-60192872 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 127 |
| Conread position: | 177-595 |
| Cow position: | chr10:22842914-22843338 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 21 |
| Conread position: | 205-452 |
| Cow position: | chr10:54979279-54979034 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 233-340 |
| Cow position: | chr10:68599073-68598966 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-566 |
| Cow position: | chr10:42679599-42679919 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 256-764 |
| Cow position: | chr10:28931570-28931061 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 265-629 |
| Cow position: | chr10:60489846-60490212 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 287-442 |
| Cow position: | chr10:8339170-8339323 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 307-620 |
| Cow position: | chr10:37107349-37107660 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 425-771 |
| Cow position: | chr10:46191710-46192047 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 478-773 |
| Cow position: | chr10:14861311-14861594 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 533-761 |
| Cow position: | chr10:38545792-38545570 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 164, 19 |
Show alignments to all cow chromosomes.