Cow genome map
Conread name: | Tra1-TCH01H040051 |
Conread position: | 19-447 |
Cow position: | chr11:87127486-87127913 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 45 |
Conread position: | 20-442 |
Cow position: | chr11:8282721-8283142 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 65 |
Conread position: | 22-373 |
Cow position: | chr11:37492003-37491648 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 19 |
Conread position: | 22-527 |
Cow position: | chr11:3240295-3240788 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 8 |
Conread position: | 23-325 |
Cow position: | chr11:28230101-28229803 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 60 |
Conread position: | 23-336 |
Cow position: | chr11:28063332-28063637 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 17 |
Conread position: | 23-336 |
Cow position: | chr11:32450515-32450828 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 157 |
Conread position: | 23-351 |
Cow position: | chr11:36744533-36744201 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-352 |
Cow position: | chr11:5343570-5343237 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-352 |
Cow position: | chr11:20921098-20920765 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-352 |
Cow position: | chr11:57628399-57628066 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-371 |
Cow position: | chr11:15983271-15983619 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-417 |
Cow position: | chr11:54209266-54209660 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 61 |
Conread position: | 23-442 |
Cow position: | chr11:10089981-10090409 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 133 |
Conread position: | 24-351 |
Cow position: | chr11:23876954-23877278 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 97 |
Conread position: | 26-574 |
Cow position: | chr11:33044470-33043921 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 58 |
Conread position: | 26-630 |
Cow position: | chr11:42428985-42429591 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 19 |
Conread position: | 27-336 |
Cow position: | chr11:67846918-67846610 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 38 |
Conread position: | 27-341 |
Cow position: | chr11:37477469-37477153 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 247 |
Conread position: | 27-352 |
Cow position: | chr11:17108035-17107705 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 58 |
Conread position: | 27-372 |
Cow position: | chr11:8887502-8887159 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 65 |
Conread position: | 28-772 |
Cow position: | chr11:29234001-29233290 (view UCSC Genome Browser custom track) |
Alignm length: | 753 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 40 |
Conread position: | 29-331 |
Cow position: | chr11:28054946-28054644 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 127 |
Conread position: | 30-335 |
Cow position: | chr11:7113250-7113554 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 77 |
Conread position: | 30-340 |
Cow position: | chr11:12351415-12351100 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 249 |
Conread position: | 30-340 |
Cow position: | chr11:66726120-66726440 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 44 |
Conread position: | 30-341 |
Cow position: | chr11:19102832-19102520 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 245 |
Conread position: | 30-350 |
Cow position: | chr11:29668974-29668656 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 220 |
Conread position: | 30-351 |
Cow position: | chr11:4271215-4270885 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 13 |
Conread position: | 30-351 |
Cow position: | chr11:10847099-10847418 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 192 |
Conread position: | 30-351 |
Cow position: | chr11:71329298-71329620 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 245 |
Conread position: | 30-373 |
Cow position: | chr11:4027900-4027565 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 129 |
Conread position: | 30-461 |
Cow position: | chr11:17220567-17220142 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 251 |
Conread position: | 30-466 |
Cow position: | chr11:4041417-4040977 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 150 |
Conread position: | 37-373 |
Cow position: | chr11:8244368-8244702 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 144 |
Conread position: | 37-389 |
Cow position: | chr11:37065462-37065098 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 41 |
Conread position: | 38-326 |
Cow position: | chr11:77728865-77728569 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 0 |
Conread position: | 40-316 |
Cow position: | chr11:9157761-9157492 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 116 |
Conread position: | 41-352 |
Cow position: | chr11:61401389-61401071 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 236 |
Conread position: | 42-371 |
Cow position: | chr11:53287788-53287461 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 18 |
Conread position: | 42-372 |
Cow position: | chr11:67450164-67450500 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 159 |
Conread position: | 44-337 |
Cow position: | chr11:31414254-31413971 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 19 |
Conread position: | 45-350 |
Cow position: | chr11:24392988-24393292 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 60 |
Conread position: | 45-351 |
Cow position: | chr11:41171023-41170716 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 230 |
Conread position: | 46-372 |
Cow position: | chr11:85394140-85393814 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 38 |
Conread position: | 51-350 |
Cow position: | chr11:26125256-26124956 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 224 |
Conread position: | 51-351 |
Cow position: | chr11:11987782-11988083 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 131 |
Conread position: | 57-334 |
Cow position: | chr11:48084794-48085069 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 187 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 76, 142 |
Conread position: | 60-330 |
Cow position: | chr11:12358741-12358470 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 215 |
Conread position: | 77-331 |
Cow position: | chr11:52886796-52886547 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 195 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 56, 113 |
Conread position: | 79-381 |
Cow position: | chr11:34020591-34020895 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 198 |
Conread position: | 84-372 |
Cow position: | chr11:25527268-25527557 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 31 |
Conread position: | 101-352 |
Cow position: | chr11:38505878-38505625 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 189 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 28, 14 |
Conread position: | 138-392 |
Cow position: | chr11:4065471-4065212 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 144-338 |
Cow position: | chr11:38132368-38132173 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 136 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 62, 126 |
Conread position: | 147-336 |
Cow position: | chr11:12093329-12093519 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 152 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 138, 126 |
Conread position: | 155-351 |
Cow position: | chr11:53432286-53432090 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 110 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 129, 119 |
Conread position: | 159-340 |
Cow position: | chr11:9220336-9220155 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 141 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 125, 115 |
Conread position: | 252-757 |
Cow position: | chr11:10050589-10051080 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 15 |
Conread position: | 274-628 |
Cow position: | chr11:81852510-81852141 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 261 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 63, 133 |
Conread position: | 299-537 |
Cow position: | chr11:43732922-43733161 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 163 |
Alignm E-value: | 7e-22 |
Alignm gaps (pig, cow): | 69, 97 |
Conread position: | 322-602 |
Cow position: | chr11:65161466-65161185 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 204 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 67, 22 |
Conread position: | 339-770 |
Cow position: | chr11:39801983-39802416 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 246 |
Conread position: | 440-772 |
Cow position: | chr11:17180209-17180523 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 230 |
Alignm E-value: | 8e-34 |
Alignm gaps (pig, cow): | 47, 40 |
Conread position: | 440-773 |
Cow position: | chr11:87128437-87128761 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 229 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 50, 41 |
Show alignments to all cow chromosomes.