Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 7-350 |
| Cow position: | chr13:32544757-32545100 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-750 |
| Cow position: | chr13:11764529-11763798 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 478 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 154, 82 |
| Conread position: | 20-619 |
| Cow position: | chr13:27923280-27922704 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 395 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 23-351 |
| Cow position: | chr13:15924671-15924342 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-352 |
| Cow position: | chr13:17308188-17308521 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr13:49973396-49973730 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 252 |
| Conread position: | 23-371 |
| Cow position: | chr13:34325962-34325612 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 170 |
| Conread position: | 23-442 |
| Cow position: | chr13:20542655-20542244 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 34 |
| Conread position: | 26-339 |
| Cow position: | chr13:34911661-34911349 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 27-336 |
| Cow position: | chr13:13324465-13324776 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-336 |
| Cow position: | chr13:32986333-32986030 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 27-341 |
| Cow position: | chr13:50109178-50109494 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 27-422 |
| Cow position: | chr13:30063845-30064224 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 111 |
| Conread position: | 29-461 |
| Cow position: | chr13:2306222-2306642 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 30-340 |
| Cow position: | chr13:3276878-3277185 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 30-341 |
| Cow position: | chr13:1593433-1593123 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 30-351 |
| Cow position: | chr13:4940807-4941130 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 246 |
| Conread position: | 30-351 |
| Cow position: | chr13:33825009-33824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 30-351 |
| Cow position: | chr13:35756961-35757283 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-352 |
| Cow position: | chr13:15520795-15520472 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 151 |
| Conread position: | 30-373 |
| Cow position: | chr13:34692883-34693229 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 247 |
| Conread position: | 30-430 |
| Cow position: | chr13:54284301-54284685 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 31-322 |
| Cow position: | chr13:47230266-47229974 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 243 |
| Conread position: | 40-598 |
| Cow position: | chr13:16343484-16342947 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 42-372 |
| Cow position: | chr13:31734349-31734017 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 163 |
| Conread position: | 44-409 |
| Cow position: | chr13:35030276-35030654 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 188 |
| Conread position: | 45-337 |
| Cow position: | chr13:21131056-21131350 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 45-382 |
| Cow position: | chr13:33927833-33927514 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 104 |
| Conread position: | 45-750 |
| Cow position: | chr13:34767548-34766850 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 111 |
| Conread position: | 51-351 |
| Cow position: | chr13:31612594-31612294 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 208 |
| Conread position: | 60-341 |
| Cow position: | chr13:9044251-9044532 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 215 |
| Conread position: | 60-372 |
| Cow position: | chr13:34042618-34042306 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 96 |
| Conread position: | 65-374 |
| Cow position: | chr13:46732466-46732165 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 73-341 |
| Cow position: | chr13:4178888-4178619 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 202 |
| Conread position: | 74-350 |
| Cow position: | chr13:4483563-4483835 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 137-336 |
| Cow position: | chr13:60466165-60466364 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 145, 136 |
| Conread position: | 139-352 |
| Cow position: | chr13:3058281-3058064 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 135 |
| Conread position: | 175-336 |
| Cow position: | chr13:34868606-34868769 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 182-774 |
| Cow position: | chr13:34111168-34111748 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 64 |
| Conread position: | 184-336 |
| Cow position: | chr13:676751-676903 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 218-442 |
| Cow position: | chr13:15451647-15451431 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 245-527 |
| Cow position: | chr13:34028052-34028335 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 123, 28 |
| Conread position: | 264-529 |
| Cow position: | chr13:15080282-15080019 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 369-769 |
| Cow position: | chr13:48357183-48357605 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 378-598 |
| Cow position: | chr13:46732047-46731823 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 478-731 |
| Cow position: | chr13:11064652-11064398 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 526-773 |
| Cow position: | chr13:43983279-43983031 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 62 |
| Conread position: | 626-772 |
| Cow position: | chr13:46731823-46731679 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 66 |
Show alignments to all cow chromosomes.