Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 12-602 |
| Cow position: | chr14:35928754-35929336 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 14-351 |
| Cow position: | chr14:15276999-15276662 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 101 |
| Conread position: | 20-467 |
| Cow position: | chr14:47589455-47589897 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 210 |
| Conread position: | 23-352 |
| Cow position: | chr14:750159-750492 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr14:2283929-2284261 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 61 |
| Conread position: | 23-372 |
| Cow position: | chr14:33394187-33393835 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-390 |
| Cow position: | chr14:30585355-30584992 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 23-431 |
| Cow position: | chr14:45205669-45206071 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 126 |
| Conread position: | 24-336 |
| Cow position: | chr14:47640733-47641042 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 24-630 |
| Cow position: | chr14:14309482-14308866 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 26-351 |
| Cow position: | chr14:13778558-13778873 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 26-381 |
| Cow position: | chr14:40170093-40169759 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 167, 106 |
| Conread position: | 26-479 |
| Cow position: | chr14:41407414-41407864 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 171 |
| Conread position: | 26-528 |
| Cow position: | chr14:22018991-22019488 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 26-764 |
| Cow position: | chr14:9102501-9101800 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 102 |
| Conread position: | 26-771 |
| Cow position: | chr14:48406092-48405380 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 478 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 27-328 |
| Cow position: | chr14:5511413-5511717 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 27-336 |
| Cow position: | chr14:29048309-29048000 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 27-370 |
| Cow position: | chr14:13302623-13302965 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 210 |
| Conread position: | 29-488 |
| Cow position: | chr14:31887272-31887732 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 151 |
| Conread position: | 30-340 |
| Cow position: | chr14:41085186-41084874 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 175 |
| Conread position: | 30-340 |
| Cow position: | chr14:44422152-44422461 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 30-340 |
| Cow position: | chr14:44855830-44855520 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 179 |
| Conread position: | 30-341 |
| Cow position: | chr14:45029519-45029216 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 30-344 |
| Cow position: | chr14:22032089-22031776 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 30-350 |
| Cow position: | chr14:16920092-16919773 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 30-350 |
| Cow position: | chr14:17001458-17001142 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 218 |
| Conread position: | 30-350 |
| Cow position: | chr14:19328672-19328351 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr14:17684992-17685314 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr14:28994258-28993936 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr14:36967851-36968173 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 245 |
| Conread position: | 30-351 |
| Cow position: | chr14:37223499-37223819 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 54 |
| Conread position: | 30-358 |
| Cow position: | chr14:20782053-20782381 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 244 |
| Conread position: | 30-373 |
| Cow position: | chr14:44130515-44130857 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 30-640 |
| Cow position: | chr14:37414292-37413685 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 227 |
| Conread position: | 31-399 |
| Cow position: | chr14:45303765-45303398 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 34-452 |
| Cow position: | chr14:40339295-40339701 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 73 |
| Conread position: | 37-331 |
| Cow position: | chr14:44685652-44685941 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 37-336 |
| Cow position: | chr14:45672441-45672142 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 196 |
| Conread position: | 37-336 |
| Cow position: | chr14:46464674-46464975 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 238 |
| Conread position: | 37-409 |
| Cow position: | chr14:44551488-44551861 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 37-769 |
| Cow position: | chr14:48150350-48149597 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 38-351 |
| Cow position: | chr14:16273691-16273378 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 235 |
| Conread position: | 40-338 |
| Cow position: | chr14:38532686-38532387 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 5 |
| Conread position: | 40-351 |
| Cow position: | chr14:22242491-22242799 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 40-388 |
| Cow position: | chr14:50134677-50135029 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 16 |
| Conread position: | 41-351 |
| Cow position: | chr14:30596779-30596466 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 41-373 |
| Cow position: | chr14:50110164-50110506 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 39, 243 |
| Conread position: | 42-336 |
| Cow position: | chr14:17491848-17491553 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 232 |
| Conread position: | 44-351 |
| Cow position: | chr14:11154556-11154248 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 212 |
| Conread position: | 44-393 |
| Cow position: | chr14:44377039-44377407 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 45-350 |
| Cow position: | chr14:5528673-5528979 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-373 |
| Cow position: | chr14:13272864-13273187 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 52-286 |
| Cow position: | chr14:41755469-41755698 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 69-409 |
| Cow position: | chr14:45833800-45834133 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 79-442 |
| Cow position: | chr14:35387502-35387141 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 79-773 |
| Cow position: | chr14:44580608-44581286 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 36 |
| Conread position: | 91-764 |
| Cow position: | chr14:38146241-38146902 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 114 |
| Conread position: | 93-764 |
| Cow position: | chr14:12608850-12609519 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 42 |
| Conread position: | 103-351 |
| Cow position: | chr14:45771105-45770861 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 143-765 |
| Cow position: | chr14:33675521-33676138 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 495 |
| Conread position: | 155-340 |
| Cow position: | chr14:13621426-13621240 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 164-351 |
| Cow position: | chr14:12743337-12743150 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 120, 110 |
| Conread position: | 191-543 |
| Cow position: | chr14:44777227-44776871 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 41 |
| Conread position: | 196-535 |
| Cow position: | chr14:45235771-45236112 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 162, 57 |
| Conread position: | 210-477 |
| Cow position: | chr14:5073726-5073993 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 223-417 |
| Cow position: | chr14:45080836-45081035 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 50 |
| Conread position: | 227-762 |
| Cow position: | chr14:44257612-44257072 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 240-529 |
| Cow position: | chr14:48969348-48969636 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 321-771 |
| Cow position: | chr14:46785661-46785215 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 413-772 |
| Cow position: | chr14:37457837-37457488 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 155 |
| Conread position: | 528-765 |
| Cow position: | chr14:44377492-44377723 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.