Cow genome map

Conread name: Tra1-TCH01H040051

Conread position: 5-460
Cow position: chr15:6621917-6622364 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 57

Conread position: 6-350
Cow position: chr15:44069494-44069841 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 270

Conread position: 14-374
Cow position: chr15:37392083-37392434 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 134

Conread position: 16-616
Cow position: chr15:32733202-32732622 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 90

Conread position: 18-611
Cow position: chr15:21448886-21449499 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 128

Conread position: 20-774
Cow position: chr15:8408140-8408887 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 20

Conread position: 23-336
Cow position: chr15:1763683-1763994 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 161

Conread position: 23-336
Cow position: chr15:1772090-1772403 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 125

Conread position: 23-336
Cow position: chr15:3010260-3009946 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-336
Cow position: chr15:6593350-6593040 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 18

Conread position: 23-336
Cow position: chr15:36970515-36970829 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-350
Cow position: chr15:7836835-7837162 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 48

Conread position: 23-351
Cow position: chr15:2076238-2076567 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 23-351
Cow position: chr15:42936305-42936633 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 47

Conread position: 23-352
Cow position: chr15:1519558-1519226 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 125

Conread position: 23-352
Cow position: chr15:2648065-2647732 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-352
Cow position: chr15:42320826-42320497 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 34

Conread position: 23-371
Cow position: chr15:4681821-4682176 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 72

Conread position: 23-386
Cow position: chr15:6472319-6471960 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 139

Conread position: 26-361
Cow position: chr15:4630318-4629986 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 27

Conread position: 26-373
Cow position: chr15:8000650-8000292 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 71

Conread position: 26-381
Cow position: chr15:16542262-16542617 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 249

Conread position: 26-447
Cow position: chr15:17787564-17787151 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 27

Conread position: 26-772
Cow position: chr15:12614662-12615396 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 171

Conread position: 27-276
Cow position: chr15:22920719-22920970 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 27-336
Cow position: chr15:4196057-4196368 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 248

Conread position: 27-365
Cow position: chr15:1662973-1663298 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 105, 12

Conread position: 27-372
Cow position: chr15:4921738-4922091 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 255

Conread position: 27-373
Cow position: chr15:8099082-8099429 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 27-443
Cow position: chr15:35648625-35648230 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 60

Conread position: 29-372
Cow position: chr15:35754001-35753657 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 226

Conread position: 29-765
Cow position: chr15:2007138-2007865 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 11

Conread position: 30-312
Cow position: chr15:51800332-51800605 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 23

Conread position: 30-330
Cow position: chr15:6554256-6553957 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 63

Conread position: 30-331
Cow position: chr15:18576318-18576613 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 91

Conread position: 30-350
Cow position: chr15:7233910-7234224 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 97, 30

Conread position: 30-351
Cow position: chr15:15347522-15347200 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-351
Cow position: chr15:19738455-19738134 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 108

Conread position: 30-351
Cow position: chr15:21666148-21665827 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 55

Conread position: 30-351
Cow position: chr15:42490803-42491123 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 26

Conread position: 30-372
Cow position: chr15:12421568-12421226 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-372
Cow position: chr15:18333229-18332888 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 135

Conread position: 30-372
Cow position: chr15:51216187-51216529 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 118

Conread position: 30-373
Cow position: chr15:25186345-25186021 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 244
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 102, 54

Conread position: 30-373
Cow position: chr15:25789370-25789028 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 121

Conread position: 30-374
Cow position: chr15:6078330-6078683 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 252

Conread position: 30-375
Cow position: chr15:6156356-6156010 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-381
Cow position: chr15:4170097-4169746 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 62

Conread position: 30-385
Cow position: chr15:24294689-24295041 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-442
Cow position: chr15:36642223-36642620 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 60

Conread position: 30-529
Cow position: chr15:324546-325043 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 7

Conread position: 34-389
Cow position: chr15:36648514-36648870 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 57

Conread position: 37-334
Cow position: chr15:17292044-17292340 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 74

Conread position: 37-336
Cow position: chr15:10888215-10888509 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 37

Conread position: 39-351
Cow position: chr15:690398-690709 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 21

Conread position: 40-340
Cow position: chr15:4671035-4671337 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 5

Conread position: 40-434
Cow position: chr15:21961115-21961512 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 235

Conread position: 41-336
Cow position: chr15:17080594-17080297 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 169

Conread position: 41-341
Cow position: chr15:4961236-4961537 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 210

Conread position: 42-336
Cow position: chr15:28490531-28490236 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 233

Conread position: 42-341
Cow position: chr15:8750037-8750334 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 0

Conread position: 42-371
Cow position: chr15:18268377-18268048 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 232

Conread position: 42-374
Cow position: chr15:4649443-4649769 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 48

Conread position: 44-407
Cow position: chr15:51671960-51672326 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 139

Conread position: 44-422
Cow position: chr15:1781866-1782253 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 230

Conread position: 45-341
Cow position: chr15:32494773-32494477 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 210

Conread position: 45-351
Cow position: chr15:31358516-31358805 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 56

Conread position: 45-388
Cow position: chr15:32693155-32693490 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 26

Conread position: 45-623
Cow position: chr15:1236933-1237504 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 103

Conread position: 45-765
Cow position: chr15:11299193-11298486 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 12

Conread position: 45-774
Cow position: chr15:40105078-40105794 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 10

Conread position: 51-336
Cow position: chr15:17271778-17271492 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 224

Conread position: 51-336
Cow position: chr15:50146697-50146983 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 223

Conread position: 51-551
Cow position: chr15:2922387-2921872 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 332
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 82, 12

Conread position: 60-625
Cow position: chr15:15266028-15265471 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 141

Conread position: 60-771
Cow position: chr15:36627044-36626347 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 216

Conread position: 73-338
Cow position: chr15:2924531-2924792 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 26

Conread position: 74-352
Cow position: chr15:6370136-6369856 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 159

Conread position: 77-336
Cow position: chr15:4678121-4678381 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 170

Conread position: 90-336
Cow position: chr15:328095-328331 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 110

Conread position: 91-774
Cow position: chr15:686186-686846 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 121

Conread position: 94-340
Cow position: chr15:7934012-7934239 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 62

Conread position: 96-373
Cow position: chr15:10787465-10787187 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 179

Conread position: 100-374
Cow position: chr15:7894562-7894289 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 159

Conread position: 161-414
Cow position: chr15:6650260-6650012 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 177, 65

Conread position: 169-535
Cow position: chr15:37407243-37406881 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 243
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 122, 22

Conread position: 172-417
Cow position: chr15:12453157-12453395 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 26

Conread position: 173-765
Cow position: chr15:9429269-9429861 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 264

Conread position: 176-772
Cow position: chr15:3843056-3842488 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 389
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 166, 78

Conread position: 190-336
Cow position: chr15:32710452-32710598 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 83

Conread position: 205-340
Cow position: chr15:5068624-5068759 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 69

Conread position: 290-773
Cow position: chr15:16507438-16507915 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 273

Conread position: 440-771
Cow position: chr15:23264649-23264989 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 40, 9

Conread position: 508-765
Cow position: chr15:24716541-24716793 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 51

Conread position: 528-765
Cow position: chr15:35648226-35647996 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 179, 30

Conread position: 552-761
Cow position: chr15:36642644-36642844 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 26

Show alignments to all cow chromosomes.