Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 14-773 |
| Cow position: | chr16:335530-336295 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 49 |
| Conread position: | 17-418 |
| Cow position: | chr16:24454342-24453937 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 264 |
| Conread position: | 22-641 |
| Cow position: | chr16:32935401-32936039 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 23-299 |
| Cow position: | chr16:2239490-2239212 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 23-309 |
| Cow position: | chr16:42051139-42050857 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 23-352 |
| Cow position: | chr16:6942867-6943208 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 259 |
| Conread position: | 23-453 |
| Cow position: | chr16:25156976-25156546 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 51 |
| Conread position: | 23-466 |
| Cow position: | chr16:25187886-25188344 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 199 |
| Conread position: | 25-535 |
| Cow position: | chr16:44966421-44966919 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 26-336 |
| Cow position: | chr16:2411724-2411412 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 250 |
| Conread position: | 26-373 |
| Cow position: | chr16:10808403-10808744 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 26-478 |
| Cow position: | chr16:31376014-31375583 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 64 |
| Conread position: | 28-331 |
| Cow position: | chr16:9777333-9777637 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 29-400 |
| Cow position: | chr16:39820881-39821256 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 204 |
| Conread position: | 29-701 |
| Cow position: | chr16:9929794-9930459 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 30-329 |
| Cow position: | chr16:10437493-10437793 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-330 |
| Cow position: | chr16:27734553-27734251 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 246 |
| Conread position: | 30-331 |
| Cow position: | chr16:15184054-15184355 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 135 |
| Conread position: | 30-336 |
| Cow position: | chr16:6549272-6548967 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 30-339 |
| Cow position: | chr16:11052412-11052720 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 205 |
| Conread position: | 30-341 |
| Cow position: | chr16:25440868-25441186 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 30-341 |
| Cow position: | chr16:25458221-25457903 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 30-341 |
| Cow position: | chr16:43898017-43897709 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 159 |
| Conread position: | 30-349 |
| Cow position: | chr16:28471844-28471531 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 151, 85 |
| Conread position: | 30-350 |
| Cow position: | chr16:23253254-23252936 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 30-350 |
| Cow position: | chr16:25341219-25341536 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 49 |
| Conread position: | 30-351 |
| Cow position: | chr16:8816854-8816532 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr16:12538673-12538353 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 126 |
| Conread position: | 30-351 |
| Cow position: | chr16:14666579-14666257 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr16:29046272-29046594 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 30-370 |
| Cow position: | chr16:15566000-15566339 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 181 |
| Conread position: | 30-372 |
| Cow position: | chr16:407784-407438 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 248 |
| Conread position: | 30-372 |
| Cow position: | chr16:1568204-1567861 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-372 |
| Cow position: | chr16:2728050-2727695 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 30-372 |
| Cow position: | chr16:15491959-15492302 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 30-373 |
| Cow position: | chr16:19713634-19713295 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 113 |
| Conread position: | 30-373 |
| Cow position: | chr16:20255059-20254717 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 30-373 |
| Cow position: | chr16:31592654-31592313 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-374 |
| Cow position: | chr16:36282651-36282990 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 173 |
| Conread position: | 30-426 |
| Cow position: | chr16:49257333-49256936 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 40-335 |
| Cow position: | chr16:56551387-56551676 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 41-351 |
| Cow position: | chr16:10204170-10203858 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 235 |
| Conread position: | 41-381 |
| Cow position: | chr16:36362099-36361756 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 42-372 |
| Cow position: | chr16:32002-32330 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 166 |
| Conread position: | 45-372 |
| Cow position: | chr16:26663014-26663343 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 67 |
| Conread position: | 46-283 |
| Cow position: | chr16:36232344-36232112 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 171 |
| Conread position: | 46-373 |
| Cow position: | chr16:836295-836623 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 229 |
| Conread position: | 47-442 |
| Cow position: | chr16:42740154-42739762 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 50-337 |
| Cow position: | chr16:24155176-24154886 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 176 |
| Conread position: | 60-331 |
| Cow position: | chr16:2483863-2483590 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 216 |
| Conread position: | 78-442 |
| Cow position: | chr16:49235848-49235487 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 96-337 |
| Cow position: | chr16:41758131-41757890 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 110-352 |
| Cow position: | chr16:31831962-31832208 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 164 |
| Conread position: | 113-410 |
| Cow position: | chr16:18500014-18499722 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 141-443 |
| Cow position: | chr16:52815125-52814827 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 105 |
| Conread position: | 156-442 |
| Cow position: | chr16:29033094-29033378 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 177-353 |
| Cow position: | chr16:25153128-25153297 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 210-422 |
| Cow position: | chr16:16273403-16273192 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 230-430 |
| Cow position: | chr16:25257055-25257253 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 253-547 |
| Cow position: | chr16:5889392-5889689 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 256-520 |
| Cow position: | chr16:5652242-5652511 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 265-442 |
| Cow position: | chr16:23807454-23807631 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 307-529 |
| Cow position: | chr16:46582981-46582770 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 360-599 |
| Cow position: | chr16:25153964-25154210 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 121, 146 |
| Conread position: | 398-772 |
| Cow position: | chr16:18499507-18499134 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 432-764 |
| Cow position: | chr16:18764373-18764057 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 482-769 |
| Cow position: | chr16:52814655-52814378 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 528-765 |
| Cow position: | chr16:29033383-29033615 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 534-773 |
| Cow position: | chr16:49235476-49235250 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 553-764 |
| Cow position: | chr16:5889890-5890092 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 135, 31 |
Show alignments to all cow chromosomes.