Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 7-351 |
| Cow position: | chr17:15850197-15850547 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 15-336 |
| Cow position: | chr17:181174-181498 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 261 |
| Conread position: | 18-350 |
| Cow position: | chr17:2579447-2579764 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 23-318 |
| Cow position: | chr17:2555944-2556239 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 185 |
| Conread position: | 23-334 |
| Cow position: | chr17:9653635-9653323 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-336 |
| Cow position: | chr17:15435612-15435926 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr17:1382993-1382660 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-388 |
| Cow position: | chr17:13856948-13856578 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-422 |
| Cow position: | chr17:4059924-4060322 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 26-773 |
| Cow position: | chr17:42264329-42265070 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 27-340 |
| Cow position: | chr17:43988359-43988672 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 151 |
| Conread position: | 27-351 |
| Cow position: | chr17:18026933-18026607 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 27-371 |
| Cow position: | chr17:1879916-1880267 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 144 |
| Conread position: | 27-371 |
| Cow position: | chr17:15143545-15143198 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 249 |
| Conread position: | 29-335 |
| Cow position: | chr17:2588143-2588437 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 29-527 |
| Cow position: | chr17:6002185-6001694 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 29-652 |
| Cow position: | chr17:1658744-1658114 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 30-340 |
| Cow position: | chr17:35592043-35592353 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 30-341 |
| Cow position: | chr17:27345633-27345938 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 30-351 |
| Cow position: | chr17:3643008-3642686 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 30-351 |
| Cow position: | chr17:14893989-14894303 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 132 |
| Conread position: | 30-351 |
| Cow position: | chr17:19269538-19269216 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 151 |
| Conread position: | 30-352 |
| Cow position: | chr17:2287214-2287537 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 245 |
| Conread position: | 30-372 |
| Cow position: | chr17:6259673-6260015 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 235 |
| Conread position: | 30-372 |
| Cow position: | chr17:11087896-11087553 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-372 |
| Cow position: | chr17:13929496-13929840 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 34-373 |
| Cow position: | chr17:1946810-1947141 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 37-336 |
| Cow position: | chr17:228467-228173 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 37-411 |
| Cow position: | chr17:2173715-2174097 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 40-336 |
| Cow position: | chr17:18185695-18185400 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 214 |
| Conread position: | 41-771 |
| Cow position: | chr17:20401513-20402231 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 145 |
| Conread position: | 42-434 |
| Cow position: | chr17:14325662-14325281 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 43-336 |
| Cow position: | chr17:23324613-23324319 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 45-350 |
| Cow position: | chr17:2248739-2248432 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 63 |
| Conread position: | 45-350 |
| Cow position: | chr17:25737506-25737812 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr17:18103837-18103535 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-374 |
| Cow position: | chr17:152639-152303 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 208 |
| Conread position: | 45-769 |
| Cow position: | chr17:4081484-4082206 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 47-630 |
| Cow position: | chr17:4295200-4295774 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 49-409 |
| Cow position: | chr17:31199796-31199455 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 90-429 |
| Cow position: | chr17:6075680-6076015 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 98-672 |
| Cow position: | chr17:2147072-2147633 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 121-772 |
| Cow position: | chr17:3709285-3708634 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 129-442 |
| Cow position: | chr17:15370978-15371288 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 150-410 |
| Cow position: | chr17:1283756-1283494 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 167-352 |
| Cow position: | chr17:43952596-43952409 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 170-351 |
| Cow position: | chr17:15323215-15323395 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 181-336 |
| Cow position: | chr17:34156108-34156263 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 185-308 |
| Cow position: | chr17:36987687-36987563 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 97, 85 |
| Conread position: | 274-756 |
| Cow position: | chr17:12670419-12669943 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 287-678 |
| Cow position: | chr17:4672514-4672904 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 307-750 |
| Cow position: | chr17:18193292-18193721 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 37 |
| Conread position: | 347-773 |
| Cow position: | chr17:18300667-18300248 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 111 |
| Conread position: | 370-765 |
| Cow position: | chr17:22557768-22558144 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 58 |
| Conread position: | 378-763 |
| Cow position: | chr17:152336-151960 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 184 |
| Conread position: | 437-623 |
| Cow position: | chr17:7562731-7562536 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 151 |
| Conread position: | 528-716 |
| Cow position: | chr17:14325268-14325090 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.