Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 13-750 |
| Cow position: | chr18:54269604-54270323 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 16-634 |
| Cow position: | chr18:16877501-16878107 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 23-336 |
| Cow position: | chr18:11275077-11274763 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 23-336 |
| Cow position: | chr18:35335508-35335822 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 252 |
| Conread position: | 23-336 |
| Cow position: | chr18:55088896-55088582 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-345 |
| Cow position: | chr18:28973876-28973550 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 23-350 |
| Cow position: | chr18:51689655-51689984 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 23-352 |
| Cow position: | chr18:24040704-24040370 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-371 |
| Cow position: | chr18:19352414-19352759 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-371 |
| Cow position: | chr18:47742047-47742395 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-430 |
| Cow position: | chr18:29236841-29237245 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 26-457 |
| Cow position: | chr18:37599497-37599080 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 31 |
| Conread position: | 26-502 |
| Cow position: | chr18:5980472-5980925 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 27-372 |
| Cow position: | chr18:51463043-51462695 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 27-373 |
| Cow position: | chr18:54044671-54044343 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 30-340 |
| Cow position: | chr18:6869221-6868912 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 30-340 |
| Cow position: | chr18:33358903-33359212 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 120 |
| Conread position: | 30-340 |
| Cow position: | chr18:48221913-48222225 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 231 |
| Conread position: | 30-341 |
| Cow position: | chr18:23944339-23944027 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 245 |
| Conread position: | 30-341 |
| Cow position: | chr18:51480874-51481187 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 246 |
| Conread position: | 30-351 |
| Cow position: | chr18:14416012-14416333 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr18:19539544-19539227 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 245 |
| Conread position: | 30-351 |
| Cow position: | chr18:23797683-23798005 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr18:36508369-36508690 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 78 |
| Conread position: | 30-372 |
| Cow position: | chr18:51258013-51258362 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 251 |
| Conread position: | 30-373 |
| Cow position: | chr18:32293804-32294138 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 30-374 |
| Cow position: | chr18:16534015-16534359 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 30-375 |
| Cow position: | chr18:41840789-41840443 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-714 |
| Cow position: | chr18:2886985-2886300 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 118 |
| Conread position: | 34-386 |
| Cow position: | chr18:46869134-46868796 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 223, 27 |
| Conread position: | 37-351 |
| Cow position: | chr18:16176575-16176260 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 148 |
| Conread position: | 37-372 |
| Cow position: | chr18:52650970-52651298 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 86 |
| Conread position: | 38-350 |
| Cow position: | chr18:27838270-27837960 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 7 |
| Conread position: | 40-373 |
| Cow position: | chr18:36211067-36210739 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 40-380 |
| Cow position: | chr18:1521174-1521531 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 252 |
| Conread position: | 44-331 |
| Cow position: | chr18:14130432-14130722 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 233 |
| Conread position: | 44-372 |
| Cow position: | chr18:40478430-40478762 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 234 |
| Conread position: | 45-351 |
| Cow position: | chr18:37505114-37505421 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-566 |
| Cow position: | chr18:46877953-46877447 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 46-417 |
| Cow position: | chr18:36258311-36257933 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 241 |
| Conread position: | 62-765 |
| Cow position: | chr18:16843268-16842580 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 73 |
| Conread position: | 71-296 |
| Cow position: | chr18:18089396-18089173 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 58, 203 |
| Conread position: | 150-375 |
| Cow position: | chr18:17992264-17992038 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 161-445 |
| Cow position: | chr18:29763538-29763815 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 185-442 |
| Cow position: | chr18:56462711-56462460 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 215-405 |
| Cow position: | chr18:51629663-51629847 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 281-528 |
| Cow position: | chr18:35289604-35289853 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 110, 200 |
| Conread position: | 436-711 |
| Cow position: | chr18:29764762-29765036 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 197 |
| Conread position: | 490-702 |
| Cow position: | chr18:8168752-8168964 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 494-771 |
| Cow position: | chr18:51275865-51275572 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 150 |
Show alignments to all cow chromosomes.