Cow genome map

Conread name: Tra1-TCH01H040051

Conread position: 3-340
Cow position: chr2:4404894-4404555 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 259

Conread position: 13-340
Cow position: chr2:44106642-44106316 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 23-336
Cow position: chr2:9907388-9907702 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-336
Cow position: chr2:44090775-44091090 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 23-350
Cow position: chr2:52062142-52062470 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 252

Conread position: 23-352
Cow position: chr2:3325089-3324756 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-352
Cow position: chr2:51991055-51990722 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-352
Cow position: chr2:80956161-80955828 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-372
Cow position: chr2:41685989-41686344 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 252

Conread position: 23-372
Cow position: chr2:49471722-49472077 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-372
Cow position: chr2:59414204-59413850 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 45

Conread position: 23-373
Cow position: chr2:44935609-44935261 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 34

Conread position: 23-386
Cow position: chr2:2184781-2184414 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 25-340
Cow position: chr2:5485757-5485459 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 208, 26

Conread position: 25-461
Cow position: chr2:50321758-50322187 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 26

Conread position: 25-772
Cow position: chr2:20874695-20873975 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 37

Conread position: 26-337
Cow position: chr2:768915-768598 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 63

Conread position: 26-417
Cow position: chr2:28746945-28747326 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 14

Conread position: 26-468
Cow position: chr2:74391638-74391184 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 94

Conread position: 26-627
Cow position: chr2:7211183-7211790 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 27

Conread position: 26-765
Cow position: chr2:63293095-63292336 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 256

Conread position: 27-335
Cow position: chr2:44346194-44346504 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 248

Conread position: 27-336
Cow position: chr2:2413318-2413007 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 248

Conread position: 27-336
Cow position: chr2:25030997-25030687 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 185

Conread position: 27-373
Cow position: chr2:26868750-26869093 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 52

Conread position: 27-389
Cow position: chr2:2380604-2380946 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 16, 81

Conread position: 27-389
Cow position: chr2:41656561-41656920 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 248

Conread position: 27-417
Cow position: chr2:6960224-6960624 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 182

Conread position: 27-430
Cow position: chr2:15578093-15577689 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 129

Conread position: 27-440
Cow position: chr2:28643640-28643242 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 36

Conread position: 29-433
Cow position: chr2:3837503-3837114 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 55

Conread position: 30-331
Cow position: chr2:36979858-36980159 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 135

Conread position: 30-336
Cow position: chr2:78741613-78741922 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 32

Conread position: 30-340
Cow position: chr2:422554-422860 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 106

Conread position: 30-340
Cow position: chr2:46946150-46946460 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 245

Conread position: 30-341
Cow position: chr2:16899729-16900043 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 151

Conread position: 30-351
Cow position: chr2:6772689-6772368 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 245

Conread position: 30-351
Cow position: chr2:10186751-10186429 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-351
Cow position: chr2:11159644-11159323 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 154

Conread position: 30-351
Cow position: chr2:28650744-28650427 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 38

Conread position: 30-351
Cow position: chr2:28792729-28793055 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 156

Conread position: 30-351
Cow position: chr2:42671905-42671584 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 181

Conread position: 30-351
Cow position: chr2:53329231-53329550 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 53

Conread position: 30-372
Cow position: chr2:47810493-47810838 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 247

Conread position: 30-372
Cow position: chr2:50983746-50983403 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 213

Conread position: 30-372
Cow position: chr2:65938965-65938625 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 34

Conread position: 30-372
Cow position: chr2:81256300-81256630 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 141

Conread position: 30-373
Cow position: chr2:16076816-16076470 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 239

Conread position: 30-373
Cow position: chr2:72922349-72922005 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 245

Conread position: 30-375
Cow position: chr2:10269178-10268832 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 30-392
Cow position: chr2:19009716-19010077 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 78

Conread position: 30-442
Cow position: chr2:7901768-7902172 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 55

Conread position: 30-467
Cow position: chr2:26921179-26921625 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 63

Conread position: 37-373
Cow position: chr2:22077281-22077613 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 72

Conread position: 39-769
Cow position: chr2:42333804-42333051 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 31

Conread position: 40-351
Cow position: chr2:32654832-32655140 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 41-336
Cow position: chr2:39421071-39421368 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 41-340
Cow position: chr2:5905369-5905070 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 223

Conread position: 41-426
Cow position: chr2:2356983-2356594 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 245

Conread position: 42-426
Cow position: chr2:36031241-36030859 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 127

Conread position: 42-457
Cow position: chr2:41172176-41172593 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 36

Conread position: 43-339
Cow position: chr2:10612132-10611834 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 232

Conread position: 44-351
Cow position: chr2:50077090-50077400 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 50

Conread position: 44-452
Cow position: chr2:14821999-14822406 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 19

Conread position: 45-336
Cow position: chr2:5870842-5870565 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 41

Conread position: 45-417
Cow position: chr2:28621330-28620965 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 153

Conread position: 45-429
Cow position: chr2:20903647-20903287 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 45-430
Cow position: chr2:1673169-1672790 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 137

Conread position: 51-422
Cow position: chr2:51305231-51304867 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 9

Conread position: 61-336
Cow position: chr2:78761986-78762259 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 213

Conread position: 69-409
Cow position: chr2:59963708-59963369 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 74-529
Cow position: chr2:75676382-75675928 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 44

Conread position: 77-422
Cow position: chr2:54737042-54737389 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 214
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 205, 24

Conread position: 79-337
Cow position: chr2:14560717-14560970 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 196

Conread position: 79-340
Cow position: chr2:2363715-2363977 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 196

Conread position: 79-442
Cow position: chr2:36054122-36053758 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 197

Conread position: 96-352
Cow position: chr2:45213741-45213480 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 183

Conread position: 106-292
Cow position: chr2:54649264-54649074 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 26, 0

Conread position: 107-550
Cow position: chr2:32389344-32389797 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 173

Conread position: 109-318
Cow position: chr2:47603893-47603688 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 109

Conread position: 117-351
Cow position: chr2:4926607-4926372 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 158

Conread position: 122-336
Cow position: chr2:67419725-67419510 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 8, 152

Conread position: 129-393
Cow position: chr2:28616623-28616363 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 176-342
Cow position: chr2:85068930-85068764 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 61

Conread position: 176-479
Cow position: chr2:41146876-41147178 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 30, 9

Conread position: 207-430
Cow position: chr2:41149652-41149878 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 135, 66

Conread position: 224-340
Cow position: chr2:1490299-1490183 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 50

Conread position: 246-630
Cow position: chr2:73191649-73192034 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 28

Conread position: 283-772
Cow position: chr2:20921111-20920633 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 325
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 83, 196

Conread position: 298-627
Cow position: chr2:201704-201373 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 37

Conread position: 299-525
Cow position: chr2:29145922-29145701 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 179, 28

Conread position: 323-654
Cow position: chr2:72596243-72596583 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 157, 54

Conread position: 353-765
Cow position: chr2:903255-903640 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 302, 57

Conread position: 446-773
Cow position: chr2:3836690-3836384 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 182, 16

Conread position: 459-775
Cow position: chr2:28747654-28747961 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 218
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 97

Conread position: 467-773
Cow position: chr2:35355195-35355498 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 21

Conread position: 484-761
Cow position: chr2:11729399-11729664 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 95

Conread position: 522-765
Cow position: chr2:16289119-16289348 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 185, 10

Conread position: 524-764
Cow position: chr2:14822394-14822623 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 552-765
Cow position: chr2:34565018-34564810 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 67, 26

Conread position: 553-773
Cow position: chr2:782141-781925 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 137, 31

Show alignments to all cow chromosomes.