Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 9-503 |
| Cow position: | chr21:36714728-36715212 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 20 |
| Conread position: | 14-336 |
| Cow position: | chr21:11453556-11453233 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 260 |
| Conread position: | 14-550 |
| Cow position: | chr21:21914384-21914919 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 197 |
| Conread position: | 20-352 |
| Cow position: | chr21:6339672-6340008 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 254 |
| Conread position: | 20-352 |
| Cow position: | chr21:12055895-12055559 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 254 |
| Conread position: | 23-307 |
| Cow position: | chr21:47948218-47948502 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 210 |
| Conread position: | 23-336 |
| Cow position: | chr21:11505696-11506019 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 259 |
| Conread position: | 23-336 |
| Cow position: | chr21:37045022-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 68 |
| Conread position: | 23-352 |
| Cow position: | chr21:46915697-46916030 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-372 |
| Cow position: | chr21:26638356-26638001 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-373 |
| Cow position: | chr21:4589883-4589531 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 252 |
| Conread position: | 23-440 |
| Cow position: | chr21:9891703-9892129 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 23-442 |
| Cow position: | chr21:23811985-23812401 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 26-336 |
| Cow position: | chr21:4086911-4087225 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 27-373 |
| Cow position: | chr21:34293129-34293475 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 29-417 |
| Cow position: | chr21:26823118-26822731 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 8 |
| Conread position: | 30-340 |
| Cow position: | chr21:2788875-2788566 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 30-351 |
| Cow position: | chr21:146039-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 213 |
| Conread position: | 30-351 |
| Cow position: | chr21:2883632-2883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr21:4456943-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 30-351 |
| Cow position: | chr21:30599804-30599488 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 114 |
| Conread position: | 30-372 |
| Cow position: | chr21:3778882-3779225 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 152 |
| Conread position: | 30-372 |
| Cow position: | chr21:13123887-13123545 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 30-478 |
| Cow position: | chr21:4076955-4077414 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 228 |
| Conread position: | 37-370 |
| Cow position: | chr21:2416354-2416676 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 40-336 |
| Cow position: | chr21:2674503-2674189 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 40-371 |
| Cow position: | chr21:7267419-7267074 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 244 |
| Conread position: | 40-442 |
| Cow position: | chr21:2541287-2540885 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 41-351 |
| Cow position: | chr21:1191291-1191601 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 8 |
| Conread position: | 42-371 |
| Cow position: | chr21:40271549-40271217 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 44-372 |
| Cow position: | chr21:48116232-48116560 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 45-338 |
| Cow position: | chr21:10762531-10762810 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 240, 38 |
| Conread position: | 45-340 |
| Cow position: | chr21:20744634-20744342 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 229 |
| Conread position: | 45-351 |
| Cow position: | chr21:27282518-27282823 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 36, 138 |
| Conread position: | 45-351 |
| Cow position: | chr21:30561933-30562240 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr21:31559524-31559218 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 137 |
| Conread position: | 45-422 |
| Cow position: | chr21:10850211-10850594 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 203 |
| Conread position: | 51-336 |
| Cow position: | chr21:39425201-39425486 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 62-408 |
| Cow position: | chr21:23860939-23861273 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 74-527 |
| Cow position: | chr21:445256-445703 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 114-351 |
| Cow position: | chr21:35143968-35144194 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 166-426 |
| Cow position: | chr21:359287-359542 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 42 |
| Conread position: | 175-351 |
| Cow position: | chr21:33251768-33251943 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 197-752 |
| Cow position: | chr21:18693230-18693768 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 206-340 |
| Cow position: | chr21:2716425-2716291 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 292-764 |
| Cow position: | chr21:21947285-21946817 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 379-773 |
| Cow position: | chr21:4093519-4093895 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 428-774 |
| Cow position: | chr21:23861393-23861760 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 497-772 |
| Cow position: | chr21:9892106-9892386 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 528-773 |
| Cow position: | chr21:359566-359804 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.