Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 6-351 |
| Cow position: | chr24:12335769-12335424 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 269 |
| Conread position: | 21-371 |
| Cow position: | chr24:33739315-33738970 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 23-336 |
| Cow position: | chr24:9092251-9091949 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 23-336 |
| Cow position: | chr24:12485295-12484981 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-352 |
| Cow position: | chr24:8030173-8030506 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr24:9188709-9188377 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 251 |
| Conread position: | 23-352 |
| Cow position: | chr24:22793195-22793527 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 128 |
| Conread position: | 23-352 |
| Cow position: | chr24:40548900-40549229 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 23-371 |
| Cow position: | chr24:6084039-6084387 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-417 |
| Cow position: | chr24:36560063-36559671 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 49 |
| Conread position: | 24-352 |
| Cow position: | chr24:6515023-6514700 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 24-414 |
| Cow position: | chr24:23098413-23098036 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 24-773 |
| Cow position: | chr24:17303584-17302847 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 25-340 |
| Cow position: | chr24:12237078-12237393 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 249 |
| Conread position: | 25-773 |
| Cow position: | chr24:36707870-36708605 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 168 |
| Conread position: | 26-324 |
| Cow position: | chr24:32331350-32331639 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 107, 91 |
| Conread position: | 26-527 |
| Cow position: | chr24:1447582-1448087 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 27-372 |
| Cow position: | chr24:6434266-6434615 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 139 |
| Conread position: | 30-330 |
| Cow position: | chr24:6335724-6336012 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 48 |
| Conread position: | 30-350 |
| Cow position: | chr24:148588-148269 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 30-351 |
| Cow position: | chr24:12086228-12086549 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 30-389 |
| Cow position: | chr24:14585122-14585469 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 48 |
| Conread position: | 30-441 |
| Cow position: | chr24:14384584-14384171 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 31-452 |
| Cow position: | chr24:12797735-12797318 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 24 |
| Conread position: | 37-331 |
| Cow position: | chr24:33933402-33933697 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 238 |
| Conread position: | 40-352 |
| Cow position: | chr24:6660569-6660246 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 40-773 |
| Cow position: | chr24:7091556-7090833 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 71 |
| Conread position: | 43-351 |
| Cow position: | chr24:29187325-29187634 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 232 |
| Conread position: | 44-331 |
| Cow position: | chr24:4415489-4415199 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 143 |
| Conread position: | 45-463 |
| Cow position: | chr24:35841580-35841163 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 188 |
| Conread position: | 45-772 |
| Cow position: | chr24:12568282-12568996 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 60-336 |
| Cow position: | chr24:17696914-17696642 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 175 |
| Conread position: | 65-339 |
| Cow position: | chr24:1438119-1437849 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 79-407 |
| Cow position: | chr24:16649240-16648913 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 197 |
| Conread position: | 101-511 |
| Cow position: | chr24:584073-583663 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 147-344 |
| Cow position: | chr24:6645850-6646047 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 135, 126 |
| Conread position: | 150-336 |
| Cow position: | chr24:7061539-7061725 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 132, 123 |
| Conread position: | 165-764 |
| Cow position: | chr24:6670378-6669807 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 369 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 122, 135 |
| Conread position: | 183-771 |
| Cow position: | chr24:16376708-16377269 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 191-466 |
| Cow position: | chr24:38636796-38637071 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-773 |
| Cow position: | chr24:13320751-13321322 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 380 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 147, 79 |
| Conread position: | 205-773 |
| Cow position: | chr24:14333248-14333825 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 231-765 |
| Cow position: | chr24:13302754-13302201 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 43 |
| Conread position: | 242-535 |
| Cow position: | chr24:43888942-43889225 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 220, 31 |
| Conread position: | 292-590 |
| Cow position: | chr24:12145645-12145343 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 315-528 |
| Cow position: | chr24:38005054-38004841 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 189, 13 |
| Conread position: | 524-761 |
| Cow position: | chr24:12797330-12797099 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 533-765 |
| Cow position: | chr24:16648870-16648647 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 534-768 |
| Cow position: | chr24:36559643-36559415 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 34 |
| Conread position: | 577-765 |
| Cow position: | chr24:17313380-17313196 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 157, 75 |
Show alignments to all cow chromosomes.