Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 2-678 |
| Cow position: | chr28:17311907-17312555 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 439 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 12-340 |
| Cow position: | chr28:7901323-7901660 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 17-340 |
| Cow position: | chr28:9155306-9154987 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 216 |
| Conread position: | 21-351 |
| Cow position: | chr28:14705693-14705362 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 212 |
| Conread position: | 23-336 |
| Cow position: | chr28:2724910-2724598 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-340 |
| Cow position: | chr28:24587414-24587733 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 252 |
| Conread position: | 23-372 |
| Cow position: | chr28:13440896-13440541 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 26-351 |
| Cow position: | chr28:17388465-17388791 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 249 |
| Conread position: | 26-442 |
| Cow position: | chr28:21358992-21359401 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 26-521 |
| Cow position: | chr28:34648927-34649417 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 166 |
| Conread position: | 27-351 |
| Cow position: | chr28:18520477-18520150 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 27-352 |
| Cow position: | chr28:14750532-14750860 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 175 |
| Conread position: | 29-409 |
| Cow position: | chr28:6780347-6779963 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 245 |
| Conread position: | 30-325 |
| Cow position: | chr28:1504839-1505135 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-335 |
| Cow position: | chr28:8721461-8721156 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 221 |
| Conread position: | 30-336 |
| Cow position: | chr28:10581998-10581691 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 243 |
| Conread position: | 30-340 |
| Cow position: | chr28:2591902-2592213 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 245 |
| Conread position: | 30-341 |
| Cow position: | chr28:5751719-5751406 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 246 |
| Conread position: | 30-350 |
| Cow position: | chr28:1814880-1814559 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-350 |
| Cow position: | chr28:12410234-12409917 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 112 |
| Conread position: | 30-350 |
| Cow position: | chr28:15378004-15377684 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 199 |
| Conread position: | 30-351 |
| Cow position: | chr28:1167894-1167572 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 30-351 |
| Cow position: | chr28:32792392-32792071 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 240 |
| Conread position: | 30-370 |
| Cow position: | chr28:8378552-8378898 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 249 |
| Conread position: | 30-372 |
| Cow position: | chr28:12150298-12150634 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 187 |
| Conread position: | 30-373 |
| Cow position: | chr28:4380851-4380513 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 30-414 |
| Cow position: | chr28:10619122-10618748 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 31-442 |
| Cow position: | chr28:5812695-5813084 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 34-340 |
| Cow position: | chr28:9137059-9136753 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 38-442 |
| Cow position: | chr28:21325787-21326179 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 40-434 |
| Cow position: | chr28:7790290-7789892 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 41-336 |
| Cow position: | chr28:9954135-9954427 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 44-324 |
| Cow position: | chr28:12232997-12232719 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 44-341 |
| Cow position: | chr28:2083597-2083895 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 222 |
| Conread position: | 44-350 |
| Cow position: | chr28:7740484-7740789 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 191 |
| Conread position: | 45-324 |
| Cow position: | chr28:22261148-22260868 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-342 |
| Cow position: | chr28:782398-782694 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 45-345 |
| Cow position: | chr28:5114797-5114508 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 45-351 |
| Cow position: | chr28:29819736-29820043 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr28:33252315-33252621 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 195 |
| Conread position: | 45-351 |
| Cow position: | chr28:34593981-34594288 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 229 |
| Conread position: | 52-351 |
| Cow position: | chr28:3192782-3192482 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 223 |
| Conread position: | 60-371 |
| Cow position: | chr28:1953144-1953458 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 217 |
| Conread position: | 60-417 |
| Cow position: | chr28:7002006-7002368 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 216 |
| Conread position: | 73-626 |
| Cow position: | chr28:2846142-2845604 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 96 |
| Conread position: | 80-442 |
| Cow position: | chr28:5797470-5797833 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 86-344 |
| Cow position: | chr28:1931941-1931682 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 93-373 |
| Cow position: | chr28:17324300-17324013 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 39, 177 |
| Conread position: | 113-753 |
| Cow position: | chr28:10463082-10462457 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 164 |
| Conread position: | 124-352 |
| Cow position: | chr28:485481-485249 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 5, 150 |
| Conread position: | 147-372 |
| Cow position: | chr28:22233292-22233064 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 137, 84 |
| Conread position: | 147-430 |
| Cow position: | chr28:10071090-10071367 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 69 |
| Conread position: | 151-773 |
| Cow position: | chr28:29092875-29092258 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 182-336 |
| Cow position: | chr28:6539121-6538967 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 102, 92 |
| Conread position: | 202-381 |
| Cow position: | chr28:24652954-24652778 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 205-350 |
| Cow position: | chr28:26426088-26425943 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 240-426 |
| Cow position: | chr28:11357515-11357332 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 284-529 |
| Cow position: | chr28:6657084-6656839 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 414-646 |
| Cow position: | chr28:22829189-22829419 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 508-749 |
| Cow position: | chr28:11357002-11356764 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 582-771 |
| Cow position: | chr28:10647262-10647070 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 585-765 |
| Cow position: | chr28:24704361-24704538 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 116, 63 |
Show alignments to all cow chromosomes.