Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 5-489 |
| Cow position: | chr29:30109033-30109540 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 343 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 16-324 |
| Cow position: | chr29:42802082-42802394 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 151 |
| Conread position: | 21-351 |
| Cow position: | chr29:2689846-2690175 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 201 |
| Conread position: | 23-352 |
| Cow position: | chr29:18856998-18856665 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-373 |
| Cow position: | chr29:9643812-9643461 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 133 |
| Conread position: | 23-422 |
| Cow position: | chr29:27980971-27980569 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-629 |
| Cow position: | chr29:1715193-1715797 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 26-324 |
| Cow position: | chr29:42650233-42650534 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 140 |
| Conread position: | 26-351 |
| Cow position: | chr29:32539760-32540085 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 26-414 |
| Cow position: | chr29:30811481-30811859 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 117 |
| Conread position: | 26-756 |
| Cow position: | chr29:803402-802670 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 27-371 |
| Cow position: | chr29:19885019-19885364 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 247 |
| Conread position: | 29-338 |
| Cow position: | chr29:14013424-14013725 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 254, 11 |
| Conread position: | 29-338 |
| Cow position: | chr29:14072987-14072686 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 254, 11 |
| Conread position: | 29-478 |
| Cow position: | chr29:19906578-19907027 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 95, 254 |
| Conread position: | 29-489 |
| Cow position: | chr29:19893716-19894184 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 30-331 |
| Cow position: | chr29:43322513-43322810 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 181 |
| Conread position: | 30-336 |
| Cow position: | chr29:10648298-10647991 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-340 |
| Cow position: | chr29:21543411-21543105 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 67 |
| Conread position: | 30-341 |
| Cow position: | chr29:16022483-16022795 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 151 |
| Conread position: | 30-350 |
| Cow position: | chr29:20251113-20251433 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 30-351 |
| Cow position: | chr29:2099798-2100120 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr29:6266540-6266226 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 30-351 |
| Cow position: | chr29:14585881-14586197 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 99 |
| Conread position: | 30-351 |
| Cow position: | chr29:19623294-19622972 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr29:19653058-19653383 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 30-372 |
| Cow position: | chr29:26164869-26164526 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 151 |
| Conread position: | 30-373 |
| Cow position: | chr29:16770082-16770419 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 30-373 |
| Cow position: | chr29:27040810-27040475 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 37-352 |
| Cow position: | chr29:670096-669778 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 140 |
| Conread position: | 41-351 |
| Cow position: | chr29:45587396-45587085 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 125 |
| Conread position: | 41-374 |
| Cow position: | chr29:10824006-10823671 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 235 |
| Conread position: | 41-544 |
| Cow position: | chr29:15950223-15949720 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 42-372 |
| Cow position: | chr29:610647-610311 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 232 |
| Conread position: | 43-336 |
| Cow position: | chr29:7840763-7841056 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 166 |
| Conread position: | 44-336 |
| Cow position: | chr29:39079745-39079452 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 44-351 |
| Cow position: | chr29:38226951-38227255 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 97 |
| Conread position: | 44-355 |
| Cow position: | chr29:2750444-2750142 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 45-331 |
| Cow position: | chr29:40503012-40502727 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 210 |
| Conread position: | 45-350 |
| Cow position: | chr29:48510-48206 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 239 |
| Conread position: | 45-351 |
| Cow position: | chr29:2841400-2841098 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 45-389 |
| Cow position: | chr29:35196635-35196981 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 164 |
| Conread position: | 45-627 |
| Cow position: | chr29:104535-105099 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 230 |
| Conread position: | 60-351 |
| Cow position: | chr29:410542-410250 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 215 |
| Conread position: | 64-276 |
| Cow position: | chr29:17662891-17663104 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 79-756 |
| Cow position: | chr29:9854959-9854244 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 471 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 198 |
| Conread position: | 152-352 |
| Cow position: | chr29:31181492-31181694 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 162-605 |
| Cow position: | chr29:24709162-24708732 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 36 |
| Conread position: | 208-447 |
| Cow position: | chr29:14086316-14086081 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 215-434 |
| Cow position: | chr29:5983070-5982849 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 221-336 |
| Cow position: | chr29:15968716-15968601 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 281-529 |
| Cow position: | chr29:13648889-13649138 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 88, 58 |
| Conread position: | 440-608 |
| Cow position: | chr29:30812193-30812360 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 476-773 |
| Cow position: | chr29:31487991-31488300 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 73 |
Show alignments to all cow chromosomes.