Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 14-352 |
| Cow position: | chr4:5879830-5880167 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 16-413 |
| Cow position: | chr4:34185207-34184830 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 23-336 |
| Cow position: | chr4:1930954-1930641 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 89 |
| Conread position: | 23-336 |
| Cow position: | chr4:47764501-47764188 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 201 |
| Conread position: | 23-350 |
| Cow position: | chr4:65223865-65223534 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-351 |
| Cow position: | chr4:36896043-36896365 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 55 |
| Conread position: | 23-371 |
| Cow position: | chr4:18424851-18424508 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 25-430 |
| Cow position: | chr4:28830699-28831098 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 251 |
| Conread position: | 26-338 |
| Cow position: | chr4:22471852-22472153 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 172, 31 |
| Conread position: | 26-350 |
| Cow position: | chr4:13492248-13492572 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 197 |
| Conread position: | 26-411 |
| Cow position: | chr4:47517995-47518362 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 175, 31 |
| Conread position: | 26-447 |
| Cow position: | chr4:11393665-11393252 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 106 |
| Conread position: | 26-599 |
| Cow position: | chr4:40824573-40824022 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 370 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 27-269 |
| Cow position: | chr4:528665-528909 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 27-336 |
| Cow position: | chr4:158187-158498 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 27-336 |
| Cow position: | chr4:3125453-3125778 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 262 |
| Conread position: | 27-336 |
| Cow position: | chr4:32211839-32212150 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-352 |
| Cow position: | chr4:6268956-6268629 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-373 |
| Cow position: | chr4:61256568-61256911 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 189 |
| Conread position: | 27-417 |
| Cow position: | chr4:17530748-17530369 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 30-336 |
| Cow position: | chr4:25599943-25599636 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-340 |
| Cow position: | chr4:66925677-66925984 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 30-341 |
| Cow position: | chr4:43880785-43881096 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 169 |
| Conread position: | 30-342 |
| Cow position: | chr4:24445525-24445218 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 250 |
| Conread position: | 30-350 |
| Cow position: | chr4:355586-355906 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 183 |
| Conread position: | 30-350 |
| Cow position: | chr4:12586974-12587295 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr4:17926579-17926257 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr4:18516572-18516894 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr4:43319960-43319649 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 131 |
| Conread position: | 30-352 |
| Cow position: | chr4:12241543-12241219 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 30-372 |
| Cow position: | chr4:11618533-11618871 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 30-372 |
| Cow position: | chr4:48026073-48026415 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-442 |
| Cow position: | chr4:46663869-46664275 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 114 |
| Conread position: | 37-351 |
| Cow position: | chr4:66179305-66178990 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 40-372 |
| Cow position: | chr4:61716496-61716180 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 40-417 |
| Cow position: | chr4:1464240-1463872 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 226 |
| Conread position: | 41-349 |
| Cow position: | chr4:26887173-26886869 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 42-336 |
| Cow position: | chr4:27333132-27333418 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 140 |
| Conread position: | 44-442 |
| Cow position: | chr4:21338309-21337919 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 44-775 |
| Cow position: | chr4:969354-968631 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 451 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 45-296 |
| Cow position: | chr4:4905837-4906089 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 229 |
| Conread position: | 45-331 |
| Cow position: | chr4:3961283-3961569 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 45-341 |
| Cow position: | chr4:44724774-44725071 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr4:45049607-45049301 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-408 |
| Cow position: | chr4:38928708-38929064 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 45-526 |
| Cow position: | chr4:8598463-8597984 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 46-336 |
| Cow position: | chr4:30307767-30307476 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 51-331 |
| Cow position: | chr4:33073413-33073132 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 159 |
| Conread position: | 51-351 |
| Cow position: | chr4:16359580-16359881 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 224 |
| Conread position: | 51-351 |
| Cow position: | chr4:33493508-33493822 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 51-351 |
| Cow position: | chr4:57979328-57979625 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 52-352 |
| Cow position: | chr4:9355073-9354769 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 222 |
| Conread position: | 60-336 |
| Cow position: | chr4:101227-100950 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 214 |
| Conread position: | 60-351 |
| Cow position: | chr4:41331143-41331436 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 72-351 |
| Cow position: | chr4:6490644-6490367 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 62 |
| Conread position: | 77-409 |
| Cow position: | chr4:17474939-17475260 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 125, 31 |
| Conread position: | 113-476 |
| Cow position: | chr4:11384717-11385075 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 118-711 |
| Cow position: | chr4:21564884-21565435 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 146-387 |
| Cow position: | chr4:4415875-4416117 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 136, 127 |
| Conread position: | 158-630 |
| Cow position: | chr4:51044124-51043677 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 162-341 |
| Cow position: | chr4:10408486-10408661 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 46 |
| Conread position: | 183-351 |
| Cow position: | chr4:31565475-31565306 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 192-336 |
| Cow position: | chr4:41954312-41954457 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 206-336 |
| Cow position: | chr4:41957982-41958112 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 206-350 |
| Cow position: | chr4:31669122-31669268 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 206-371 |
| Cow position: | chr4:18190259-18190422 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 259-626 |
| Cow position: | chr4:27443478-27443847 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 285-544 |
| Cow position: | chr4:23493648-23493898 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 58, 156 |
| Conread position: | 398-773 |
| Cow position: | chr4:14549619-14549995 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 453-630 |
| Cow position: | chr4:35795706-35795895 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 135 |
Show alignments to all cow chromosomes.