Cow genome map

Conread name: Tra1-TCH01H040051

Conread position: 14-352
Cow position: chr4:5879830-5880167 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 76

Conread position: 16-413
Cow position: chr4:34185207-34184830 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 28

Conread position: 23-336
Cow position: chr4:1930954-1930641 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 89

Conread position: 23-336
Cow position: chr4:47764501-47764188 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 201

Conread position: 23-350
Cow position: chr4:65223865-65223534 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-351
Cow position: chr4:36896043-36896365 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 55

Conread position: 23-371
Cow position: chr4:18424851-18424508 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 67

Conread position: 25-430
Cow position: chr4:28830699-28831098 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 251

Conread position: 26-338
Cow position: chr4:22471852-22472153 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 172, 31

Conread position: 26-350
Cow position: chr4:13492248-13492572 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 197

Conread position: 26-411
Cow position: chr4:47517995-47518362 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 175, 31

Conread position: 26-447
Cow position: chr4:11393665-11393252 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 106

Conread position: 26-599
Cow position: chr4:40824573-40824022 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 370
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 70, 25

Conread position: 27-269
Cow position: chr4:528665-528909 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 27-336
Cow position: chr4:158187-158498 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 27-336
Cow position: chr4:3125453-3125778 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 262

Conread position: 27-336
Cow position: chr4:32211839-32212150 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 248

Conread position: 27-352
Cow position: chr4:6268956-6268629 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 248

Conread position: 27-373
Cow position: chr4:61256568-61256911 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 189

Conread position: 27-417
Cow position: chr4:17530748-17530369 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 13

Conread position: 30-336
Cow position: chr4:25599943-25599636 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-340
Cow position: chr4:66925677-66925984 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 23

Conread position: 30-341
Cow position: chr4:43880785-43881096 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 169

Conread position: 30-342
Cow position: chr4:24445525-24445218 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 250

Conread position: 30-350
Cow position: chr4:355586-355906 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 183

Conread position: 30-350
Cow position: chr4:12586974-12587295 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-351
Cow position: chr4:17926579-17926257 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-351
Cow position: chr4:18516572-18516894 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-351
Cow position: chr4:43319960-43319649 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 131

Conread position: 30-352
Cow position: chr4:12241543-12241219 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 30-372
Cow position: chr4:11618533-11618871 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 60

Conread position: 30-372
Cow position: chr4:48026073-48026415 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-442
Cow position: chr4:46663869-46664275 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 114

Conread position: 37-351
Cow position: chr4:66179305-66178990 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 40-372
Cow position: chr4:61716496-61716180 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 216
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 28

Conread position: 40-417
Cow position: chr4:1464240-1463872 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 226

Conread position: 41-349
Cow position: chr4:26887173-26886869 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 22

Conread position: 42-336
Cow position: chr4:27333132-27333418 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 140

Conread position: 44-442
Cow position: chr4:21338309-21337919 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 10

Conread position: 44-775
Cow position: chr4:969354-968631 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 451
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 27

Conread position: 45-296
Cow position: chr4:4905837-4906089 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 229

Conread position: 45-331
Cow position: chr4:3961283-3961569 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 46

Conread position: 45-341
Cow position: chr4:44724774-44725071 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 230

Conread position: 45-351
Cow position: chr4:45049607-45049301 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 230

Conread position: 45-408
Cow position: chr4:38928708-38929064 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 228
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 69

Conread position: 45-526
Cow position: chr4:8598463-8597984 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 28

Conread position: 46-336
Cow position: chr4:30307767-30307476 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 15

Conread position: 51-331
Cow position: chr4:33073413-33073132 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 159

Conread position: 51-351
Cow position: chr4:16359580-16359881 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 224

Conread position: 51-351
Cow position: chr4:33493508-33493822 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 78, 32

Conread position: 51-351
Cow position: chr4:57979328-57979625 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 43

Conread position: 52-352
Cow position: chr4:9355073-9354769 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 222

Conread position: 60-336
Cow position: chr4:101227-100950 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 214

Conread position: 60-351
Cow position: chr4:41331143-41331436 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 72-351
Cow position: chr4:6490644-6490367 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 62

Conread position: 77-409
Cow position: chr4:17474939-17475260 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 218
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 125, 31

Conread position: 113-476
Cow position: chr4:11384717-11385075 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 143

Conread position: 118-711
Cow position: chr4:21564884-21565435 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 55

Conread position: 146-387
Cow position: chr4:4415875-4416117 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 136, 127

Conread position: 158-630
Cow position: chr4:51044124-51043677 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 56

Conread position: 162-341
Cow position: chr4:10408486-10408661 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 94, 46

Conread position: 183-351
Cow position: chr4:31565475-31565306 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 192-336
Cow position: chr4:41954312-41954457 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 81

Conread position: 206-336
Cow position: chr4:41957982-41958112 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 76, 66

Conread position: 206-350
Cow position: chr4:31669122-31669268 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 206-371
Cow position: chr4:18190259-18190422 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 46

Conread position: 259-626
Cow position: chr4:27443478-27443847 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 285-544
Cow position: chr4:23493648-23493898 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 58, 156

Conread position: 398-773
Cow position: chr4:14549619-14549995 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 258
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 7

Conread position: 453-630
Cow position: chr4:35795706-35795895 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 135

Show alignments to all cow chromosomes.