Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 14-308 |
| Cow position: | chr5:61273427-61273138 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 90 |
| Conread position: | 14-352 |
| Cow position: | chr5:48468522-48468183 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 16-697 |
| Cow position: | chr5:31202861-31202197 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 16-771 |
| Cow position: | chr5:25000886-25000131 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 20-351 |
| Cow position: | chr5:57482788-57482454 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 257 |
| Conread position: | 21-334 |
| Cow position: | chr5:32673983-32673665 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 21-351 |
| Cow position: | chr5:55627749-55628078 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 135 |
| Conread position: | 23-336 |
| Cow position: | chr5:6589258-6588943 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-336 |
| Cow position: | chr5:29042275-29042588 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 166 |
| Conread position: | 23-336 |
| Cow position: | chr5:45182346-45182026 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 257 |
| Conread position: | 23-336 |
| Cow position: | chr5:54932454-54932141 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 23-340 |
| Cow position: | chr5:59482018-59482334 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 55 |
| Conread position: | 23-341 |
| Cow position: | chr5:28006967-28007272 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 23-350 |
| Cow position: | chr5:49518423-49518749 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 160 |
| Conread position: | 23-351 |
| Cow position: | chr5:24098412-24098741 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 23-352 |
| Cow position: | chr5:24576677-24577011 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 252 |
| Conread position: | 23-352 |
| Cow position: | chr5:26079455-26079124 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-372 |
| Cow position: | chr5:46644450-46644803 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-492 |
| Cow position: | chr5:32772245-32772736 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 251 |
| Conread position: | 25-470 |
| Cow position: | chr5:52433740-52434177 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 25-772 |
| Cow position: | chr5:26068949-26068218 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 29 |
| Conread position: | 26-170 |
| Cow position: | chr5:27683003-27682859 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 106, 130 |
| Conread position: | 26-350 |
| Cow position: | chr5:37732112-37732437 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 249 |
| Conread position: | 26-414 |
| Cow position: | chr5:14659327-14658947 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 26-570 |
| Cow position: | chr5:51319480-51318938 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 27-351 |
| Cow position: | chr5:54792845-54792543 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 27-371 |
| Cow position: | chr5:4019432-4019087 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-373 |
| Cow position: | chr5:20972266-20971932 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 156 |
| Conread position: | 27-773 |
| Cow position: | chr5:14346611-14345849 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 29-524 |
| Cow position: | chr5:23755852-23755365 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 248 |
| Conread position: | 30-336 |
| Cow position: | chr5:2430362-2430055 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-336 |
| Cow position: | chr5:58195772-58196079 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 244 |
| Conread position: | 30-340 |
| Cow position: | chr5:9686658-9686346 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 30-351 |
| Cow position: | chr5:49119511-49119189 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 245 |
| Conread position: | 30-351 |
| Cow position: | chr5:64782248-64781926 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-372 |
| Cow position: | chr5:415952-415609 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-381 |
| Cow position: | chr5:26769581-26769928 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 69 |
| Conread position: | 30-442 |
| Cow position: | chr5:49593686-49593273 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 357 |
| Conread position: | 30-482 |
| Cow position: | chr5:48808945-48808487 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-773 |
| Cow position: | chr5:46630670-46629943 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 34-386 |
| Cow position: | chr5:41962464-41962111 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 246 |
| Conread position: | 39-372 |
| Cow position: | chr5:31706355-31706686 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 145 |
| Conread position: | 41-351 |
| Cow position: | chr5:3785570-3785877 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 42-372 |
| Cow position: | chr5:3964253-3964570 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 42-372 |
| Cow position: | chr5:10776482-10776152 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 232 |
| Conread position: | 44-775 |
| Cow position: | chr5:29436181-29435462 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 45-337 |
| Cow position: | chr5:28022940-28023231 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 200 |
| Conread position: | 45-350 |
| Cow position: | chr5:30579107-30579413 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 45-372 |
| Cow position: | chr5:4068775-4069101 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 236 |
| Conread position: | 45-571 |
| Cow position: | chr5:49101409-49101931 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 45-590 |
| Cow position: | chr5:49129003-49129535 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 45-764 |
| Cow position: | chr5:39247597-39246921 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 46-351 |
| Cow position: | chr5:46738798-46738493 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 50-373 |
| Cow position: | chr5:49182060-49182383 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 10 |
| Conread position: | 51-765 |
| Cow position: | chr5:27001403-27002126 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 34 |
| Conread position: | 52-350 |
| Cow position: | chr5:73489769-73489470 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 223 |
| Conread position: | 73-541 |
| Cow position: | chr5:27489061-27489536 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 201 |
| Conread position: | 96-618 |
| Cow position: | chr5:51771462-51770935 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 97-482 |
| Cow position: | chr5:76123737-76123349 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 32 |
| Conread position: | 111-304 |
| Cow position: | chr5:17774189-17773995 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 163 |
| Conread position: | 111-373 |
| Cow position: | chr5:4385108-4385360 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 118-352 |
| Cow position: | chr5:23960455-23960219 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 164, 61 |
| Conread position: | 173-389 |
| Cow position: | chr5:18271522-18271736 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 109, 90 |
| Conread position: | 175-478 |
| Cow position: | chr5:27682828-27682520 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 90 |
| Conread position: | 185-773 |
| Cow position: | chr5:18117649-18117081 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 87 |
| Conread position: | 187-573 |
| Cow position: | chr5:27060098-27059709 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 187-773 |
| Cow position: | chr5:27059195-27058630 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 191-450 |
| Cow position: | chr5:23228163-23228416 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 190, 83 |
| Conread position: | 201-732 |
| Cow position: | chr5:16103705-16103185 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 221-340 |
| Cow position: | chr5:6611973-6612092 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 223-417 |
| Cow position: | chr5:40053423-40053607 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 257-619 |
| Cow position: | chr5:7502912-7502542 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 24 |
| Conread position: | 257-774 |
| Cow position: | chr5:14785803-14785283 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 100, 143 |
| Conread position: | 379-770 |
| Cow position: | chr5:35525506-35525901 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 455-764 |
| Cow position: | chr5:51164134-51164442 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 528-771 |
| Cow position: | chr5:41962090-41961841 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 98, 49 |
Show alignments to all cow chromosomes.