Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 3-381 |
| Cow position: | chr6:40554709-40554325 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 13-351 |
| Cow position: | chr6:29311386-29311725 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 15-471 |
| Cow position: | chr6:35420701-35420256 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 16-336 |
| Cow position: | chr6:68026690-68027011 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 23-331 |
| Cow position: | chr6:13317580-13317284 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 23-336 |
| Cow position: | chr6:331563-331250 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 206 |
| Conread position: | 23-336 |
| Cow position: | chr6:7141568-7141268 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 23-336 |
| Cow position: | chr6:65822221-65821907 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr6:1405333-1405000 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr6:1412035-1411702 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-352 |
| Cow position: | chr6:2554613-2554944 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 23-352 |
| Cow position: | chr6:27169482-27169819 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 255 |
| Conread position: | 23-352 |
| Cow position: | chr6:28491608-28491276 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 116 |
| Conread position: | 23-374 |
| Cow position: | chr6:33459770-33460120 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 37 |
| Conread position: | 23-422 |
| Cow position: | chr6:26670958-26670554 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 133 |
| Conread position: | 23-442 |
| Cow position: | chr6:38232181-38232601 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 148 |
| Conread position: | 26-336 |
| Cow position: | chr6:44028955-44029258 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 26-407 |
| Cow position: | chr6:41552931-41553291 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 26-417 |
| Cow position: | chr6:32074827-32074434 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 26-707 |
| Cow position: | chr6:32330883-32330212 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 250 |
| Conread position: | 26-746 |
| Cow position: | chr6:1100678-1099984 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 70 |
| Conread position: | 26-753 |
| Cow position: | chr6:7179781-7179053 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 44 |
| Conread position: | 26-764 |
| Cow position: | chr6:37642308-37643041 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 27-271 |
| Cow position: | chr6:57870095-57869849 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 27-331 |
| Cow position: | chr6:64715139-64715443 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 157 |
| Conread position: | 27-336 |
| Cow position: | chr6:13103966-13104277 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 248 |
| Conread position: | 27-336 |
| Cow position: | chr6:16051788-16052099 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-350 |
| Cow position: | chr6:30275270-30274946 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 249 |
| Conread position: | 27-351 |
| Cow position: | chr6:24238973-24239299 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 249 |
| Conread position: | 27-352 |
| Cow position: | chr6:13943819-13944146 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 27-380 |
| Cow position: | chr6:30478999-30479362 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 256 |
| Conread position: | 27-390 |
| Cow position: | chr6:28063246-28063612 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 165 |
| Conread position: | 27-417 |
| Cow position: | chr6:55544418-55544024 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 248 |
| Conread position: | 28-371 |
| Cow position: | chr6:39908439-39908780 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 115 |
| Conread position: | 29-605 |
| Cow position: | chr6:59741138-59740566 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 34 |
| Conread position: | 30-325 |
| Cow position: | chr6:25214171-25214466 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 30-347 |
| Cow position: | chr6:20561197-20560882 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 30-350 |
| Cow position: | chr6:701867-702183 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr6:913553-913887 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 246 |
| Conread position: | 30-351 |
| Cow position: | chr6:17045971-17046289 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 145 |
| Conread position: | 30-351 |
| Cow position: | chr6:27530091-27529773 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 142 |
| Conread position: | 30-351 |
| Cow position: | chr6:34893097-34892772 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 30-351 |
| Cow position: | chr6:65841507-65841818 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 81 |
| Conread position: | 30-373 |
| Cow position: | chr6:59919366-59919029 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 159 |
| Conread position: | 30-381 |
| Cow position: | chr6:13276715-13277067 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 40-514 |
| Cow position: | chr6:65927859-65928340 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 41-336 |
| Cow position: | chr6:13846956-13847251 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 207 |
| Conread position: | 44-331 |
| Cow position: | chr6:6566532-6566819 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 44-331 |
| Cow position: | chr6:47043276-47042985 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 44-350 |
| Cow position: | chr6:15141256-15140947 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 44-350 |
| Cow position: | chr6:15280623-15280319 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 44-351 |
| Cow position: | chr6:8761381-8761071 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 233 |
| Conread position: | 44-352 |
| Cow position: | chr6:2374623-2374938 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 233 |
| Conread position: | 44-691 |
| Cow position: | chr6:25359434-25360065 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 416 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 45-324 |
| Cow position: | chr6:3889552-3889272 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr6:8201659-8201971 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 45-353 |
| Cow position: | chr6:3488473-3488163 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 222 |
| Conread position: | 45-365 |
| Cow position: | chr6:15476204-15476535 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 45-373 |
| Cow position: | chr6:65880794-65881123 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-773 |
| Cow position: | chr6:1383926-1383238 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 470 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 339, 72 |
| Conread position: | 46-640 |
| Cow position: | chr6:51190433-51191021 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 51-372 |
| Cow position: | chr6:3278017-3277695 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 222 |
| Conread position: | 73-408 |
| Cow position: | chr6:40315012-40315334 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 74-434 |
| Cow position: | chr6:6476526-6476174 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 138-374 |
| Cow position: | chr6:65899881-65899644 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 116, 53 |
| Conread position: | 171-430 |
| Cow position: | chr6:43608299-43608049 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 207-381 |
| Cow position: | chr6:1822550-1822378 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 210-529 |
| Cow position: | chr6:52805124-52805432 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 214-422 |
| Cow position: | chr6:58026855-58027066 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 221-373 |
| Cow position: | chr6:52693127-52693279 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 253-626 |
| Cow position: | chr6:12680154-12680508 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 227, 21 |
| Conread position: | 307-529 |
| Cow position: | chr6:8020460-8020686 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 172, 83 |
| Conread position: | 409-773 |
| Cow position: | chr6:15476784-15477137 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 523-775 |
| Cow position: | chr6:35419831-35419593 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 234, 54 |
| Conread position: | 524-769 |
| Cow position: | chr6:42616450-42616688 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 183, 60 |
| Conread position: | 578-774 |
| Cow position: | chr6:33995285-33995085 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 127 |
Show alignments to all cow chromosomes.