Cow genome map
| Conread name: | Tra1-TCH01H040051 |
| Conread position: | 5-338 |
| Cow position: | chr7:25102012-25102336 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 24 |
| Conread position: | 5-623 |
| Cow position: | chr7:39556117-39555496 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 24 |
| Conread position: | 23-276 |
| Cow position: | chr7:26026034-26026284 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 106, 169 |
| Conread position: | 23-336 |
| Cow position: | chr7:6648660-6648347 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-340 |
| Cow position: | chr7:48633391-48633692 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 261, 37 |
| Conread position: | 23-351 |
| Cow position: | chr7:13537588-13537260 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 232 |
| Conread position: | 23-351 |
| Cow position: | chr7:21235016-21234688 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 176 |
| Conread position: | 23-372 |
| Cow position: | chr7:3234688-3234333 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 251 |
| Conread position: | 23-386 |
| Cow position: | chr7:6642883-6642515 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-390 |
| Cow position: | chr7:68479162-68479532 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 252 |
| Conread position: | 23-432 |
| Cow position: | chr7:5662375-5662782 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 24-647 |
| Cow position: | chr7:55280823-55280204 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 49 |
| Conread position: | 24-773 |
| Cow position: | chr7:58993194-58993914 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 26-411 |
| Cow position: | chr7:21310207-21310589 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 130 |
| Conread position: | 26-425 |
| Cow position: | chr7:27540359-27539968 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 14 |
| Conread position: | 26-477 |
| Cow position: | chr7:27126161-27126605 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 118 |
| Conread position: | 26-487 |
| Cow position: | chr7:68328672-68329110 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 26-504 |
| Cow position: | chr7:63020851-63021322 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 62 |
| Conread position: | 26-771 |
| Cow position: | chr7:68076427-68077176 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 63 |
| Conread position: | 26-772 |
| Cow position: | chr7:23836120-23836868 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 31 |
| Conread position: | 27-288 |
| Cow position: | chr7:27102116-27101853 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 248 |
| Conread position: | 27-352 |
| Cow position: | chr7:20555712-20556042 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 248 |
| Conread position: | 29-574 |
| Cow position: | chr7:1400358-1399817 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 72 |
| Conread position: | 30-319 |
| Cow position: | chr7:33878363-33878079 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 54 |
| Conread position: | 30-331 |
| Cow position: | chr7:10431416-10431114 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-331 |
| Cow position: | chr7:45949148-45948848 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 152 |
| Conread position: | 30-340 |
| Cow position: | chr7:67417045-67417355 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 245 |
| Conread position: | 30-341 |
| Cow position: | chr7:994236-994544 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 187 |
| Conread position: | 30-350 |
| Cow position: | chr7:21320158-21320482 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 244 |
| Conread position: | 30-350 |
| Cow position: | chr7:33406240-33405919 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 188 |
| Conread position: | 30-351 |
| Cow position: | chr7:446629-446307 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr7:1372650-1372328 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr7:24808465-24808141 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 30-351 |
| Cow position: | chr7:34149094-34149422 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 30-351 |
| Cow position: | chr7:34485910-34486238 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 30-353 |
| Cow position: | chr7:3552268-3551943 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 115 |
| Conread position: | 30-363 |
| Cow position: | chr7:52120077-52119749 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 30-373 |
| Cow position: | chr7:27786626-27786966 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 82 |
| Conread position: | 30-434 |
| Cow position: | chr7:35287558-35287150 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 168 |
| Conread position: | 37-773 |
| Cow position: | chr7:59136419-59137167 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 40-373 |
| Cow position: | chr7:1611196-1610865 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 41-372 |
| Cow position: | chr7:63385352-63385685 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 235 |
| Conread position: | 41-442 |
| Cow position: | chr7:3154778-3155191 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 41-647 |
| Cow position: | chr7:47050699-47051309 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 44-341 |
| Cow position: | chr7:14139587-14139287 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 44-351 |
| Cow position: | chr7:46902067-46901757 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 234 |
| Conread position: | 45-326 |
| Cow position: | chr7:38536526-38536812 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 189 |
| Conread position: | 45-350 |
| Cow position: | chr7:39791772-39792078 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr7:8145227-8144920 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 45-351 |
| Cow position: | chr7:21985416-21985723 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 230 |
| Conread position: | 45-434 |
| Cow position: | chr7:51013971-51014347 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 154 |
| Conread position: | 45-548 |
| Cow position: | chr7:58551250-58551734 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 46-351 |
| Cow position: | chr7:64241931-64241624 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 230 |
| Conread position: | 46-442 |
| Cow position: | chr7:68778136-68777746 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 202 |
| Conread position: | 50-575 |
| Cow position: | chr7:52804685-52804172 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 10 |
| Conread position: | 50-771 |
| Cow position: | chr7:24056301-24057047 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 210 |
| Conread position: | 51-372 |
| Cow position: | chr7:25439529-25439860 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 222 |
| Conread position: | 51-396 |
| Cow position: | chr7:750941-751282 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 73-389 |
| Cow position: | chr7:68858070-68857752 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 204 |
| Conread position: | 74-428 |
| Cow position: | chr7:3730025-3730375 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 79-363 |
| Cow position: | chr7:68907881-68908163 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 84-336 |
| Cow position: | chr7:60463205-60463458 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 190 |
| Conread position: | 85-374 |
| Cow position: | chr7:5183462-5183752 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 189 |
| Conread position: | 94-442 |
| Cow position: | chr7:29470189-29470533 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 95-765 |
| Cow position: | chr7:65339647-65338971 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 420 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 182 |
| Conread position: | 104-755 |
| Cow position: | chr7:63550614-63550008 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 122-636 |
| Cow position: | chr7:49290755-49291269 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 153 |
| Conread position: | 129-442 |
| Cow position: | chr7:24934862-24934554 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 86 |
| Conread position: | 155-415 |
| Cow position: | chr7:20820412-20820668 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 176-411 |
| Cow position: | chr7:53990901-53991134 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 97 |
| Conread position: | 192-449 |
| Cow position: | chr7:54196088-54195831 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 198-431 |
| Cow position: | chr7:21929315-21929552 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 221-529 |
| Cow position: | chr7:68557434-68557737 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 258-498 |
| Cow position: | chr7:6489108-6488862 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 195 |
| Conread position: | 322-630 |
| Cow position: | chr7:20306280-20305975 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 384-765 |
| Cow position: | chr7:27560621-27560247 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 117 |
| Conread position: | 495-771 |
| Cow position: | chr7:68329338-68329606 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 202, 33 |
| Conread position: | 525-772 |
| Cow position: | chr7:51014355-51014590 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.