Cow genome map


           Conread name:
           Tra1-TCH01H040051
        

               Conread position:
               5-338
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               127, 24
               

               Conread position:
               5-623
               

               Cow position:
               
               

               Alignm length:
               632
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 24
               

               Conread position:
               23-276
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               106, 169
               

               Conread position:
               23-336
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 251
               

               Conread position:
               23-340
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               261, 37
               

               Conread position:
               23-351
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 232
               

               Conread position:
               23-351
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 176
               

               Conread position:
               23-372
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 251
               

               Conread position:
               23-386
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 252
               

               Conread position:
               23-390
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 252
               

               Conread position:
               23-432
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 32
               

               Conread position:
               24-647
               

               Cow position:
               
               

               Alignm length:
               644
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 49
               

               Conread position:
               24-773
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               531
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 133
               

               Conread position:
               26-411
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 130
               

               Conread position:
               26-425
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 14
               

               Conread position:
               26-477
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 118
               

               Conread position:
               26-487
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               311
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               107, 42
               

               Conread position:
               26-504
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 62
               

               Conread position:
               26-771
               

               Cow position:
               
               

               Alignm length:
               773
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 63
               

               Conread position:
               26-772
               

               Cow position:
               
               

               Alignm length:
               776
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 31
               

               Conread position:
               27-288
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 248
               

               Conread position:
               27-352
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 248
               

               Conread position:
               29-574
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 72
               

               Conread position:
               30-319
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 54
               

               Conread position:
               30-331
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 245
               

               Conread position:
               30-331
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 152
               

               Conread position:
               30-340
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 245
               

               Conread position:
               30-341
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               65, 187
               

               Conread position:
               30-350
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 244
               

               Conread position:
               30-350
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 188
               

               Conread position:
               30-351
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 245
               

               Conread position:
               30-351
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 245
               

               Conread position:
               30-351
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 245
               

               Conread position:
               30-351
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 69
               

               Conread position:
               30-351
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 33
               

               Conread position:
               30-353
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               102, 115
               

               Conread position:
               30-363
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               102, 35
               

               Conread position:
               30-373
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 82
               

               Conread position:
               30-434
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 168
               

               Conread position:
               37-773
               

               Cow position:
               
               

               Alignm length:
               770
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 53
               

               Conread position:
               40-373
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 28
               

               Conread position:
               41-372
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 235
               

               Conread position:
               41-442
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 40
               

               Conread position:
               41-647
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 110
               

               Conread position:
               44-341
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               44-351
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 234
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 189
               

               Conread position:
               45-350
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 230
               

               Conread position:
               45-351
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 230
               

               Conread position:
               45-351
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 230
               

               Conread position:
               45-434
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 154
               

               Conread position:
               45-548
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               328
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               15, 73
               

               Conread position:
               46-351
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 230
               

               Conread position:
               46-442
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 202
               

               Conread position:
               50-575
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 10
               

               Conread position:
               50-771
               

               Cow position:
               
               

               Alignm length:
               760
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 210
               

               Conread position:
               51-372
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 222
               

               Conread position:
               51-396
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 19
               

               Conread position:
               73-389
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 204
               

               Conread position:
               74-428
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               59, 107
               

               Conread position:
               79-363
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 116
               

               Conread position:
               84-336
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 190
               

               Conread position:
               85-374
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 189
               

               Conread position:
               94-442
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 118
               

               Conread position:
               95-765
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               420
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               46, 182
               

               Conread position:
               104-755
               

               Cow position:
               
               

               Alignm length:
               656
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 96
               

               Conread position:
               122-636
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 153
               

               Conread position:
               129-442
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 86
               

               Conread position:
               155-415
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               176-411
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 97
               

               Conread position:
               192-449
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               92, 14
               

               Conread position:
               198-431
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               86, 24
               

               Conread position:
               221-529
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               50, 33
               

               Conread position:
               258-498
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               33, 195
               

               Conread position:
               322-630
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               120, 130
               

               Conread position:
               384-765
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               95, 117
               

               Conread position:
               495-771
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               202, 33
               

               Conread position:
               525-772
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 0
               
Show alignments to all cow chromosomes.