Cow genome map
Conread name: | Tra1-TCH01H040051 |
Conread position: | 10-323 |
Cow position: | chr9:43662778-43663081 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 232 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 13, 54 |
Conread position: | 10-432 |
Cow position: | chr9:35657778-35658186 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 19 |
Conread position: | 13-350 |
Cow position: | chr9:1979808-1980141 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 17 |
Conread position: | 13-411 |
Cow position: | chr9:37971384-37970985 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 79 |
Conread position: | 14-373 |
Cow position: | chr9:3567027-3566667 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 64 |
Conread position: | 14-654 |
Cow position: | chr9:6973952-6974597 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 130 |
Conread position: | 17-350 |
Cow position: | chr9:16268198-16268534 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 259 |
Conread position: | 23-336 |
Cow position: | chr9:3006411-3006097 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 250 |
Conread position: | 23-352 |
Cow position: | chr9:1076364-1076030 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 0 |
Conread position: | 23-352 |
Cow position: | chr9:25755389-25755056 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-352 |
Cow position: | chr9:30826516-30826849 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 251 |
Conread position: | 23-352 |
Cow position: | chr9:34242763-34242431 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 178 |
Conread position: | 23-386 |
Cow position: | chr9:5424347-5423984 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 252 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 171, 29 |
Conread position: | 23-389 |
Cow position: | chr9:28677810-28678170 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 64 |
Conread position: | 24-333 |
Cow position: | chr9:35317743-35317432 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 211 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 14, 69 |
Conread position: | 26-326 |
Cow position: | chr9:4984606-4984910 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 28 |
Conread position: | 26-374 |
Cow position: | chr9:18836847-18837196 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 120 |
Conread position: | 26-402 |
Cow position: | chr9:6757410-6757777 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 66 |
Conread position: | 26-491 |
Cow position: | chr9:26002293-26001853 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 301 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 260, 91 |
Conread position: | 27-336 |
Cow position: | chr9:131359-131041 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 256 |
Conread position: | 27-336 |
Cow position: | chr9:31194329-31194018 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 248 |
Conread position: | 27-336 |
Cow position: | chr9:45873186-45873497 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 248 |
Conread position: | 27-340 |
Cow position: | chr9:3155870-3156175 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 61 |
Conread position: | 27-352 |
Cow position: | chr9:27933932-27934257 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 149 |
Conread position: | 27-373 |
Cow position: | chr9:37129699-37129360 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 58 |
Conread position: | 27-407 |
Cow position: | chr9:42568709-42569088 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 301 |
Conread position: | 27-418 |
Cow position: | chr9:1996075-1995682 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 158 |
Conread position: | 28-773 |
Cow position: | chr9:7012174-7012883 (view UCSC Genome Browser custom track) |
Alignm length: | 762 |
Alignm identity: | 482 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 88, 26 |
Conread position: | 29-760 |
Cow position: | chr9:64118668-64119381 (view UCSC Genome Browser custom track) |
Alignm length: | 748 |
Alignm identity: | 531 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 11 |
Conread position: | 30-307 |
Cow position: | chr9:37162966-37162687 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 246 |
Conread position: | 30-331 |
Cow position: | chr9:3548331-3548030 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 182 |
Conread position: | 30-331 |
Cow position: | chr9:25023460-25023158 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 245 |
Conread position: | 30-349 |
Cow position: | chr9:34992223-34992554 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 256 |
Conread position: | 30-350 |
Cow position: | chr9:9012946-9013270 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 247 |
Conread position: | 30-350 |
Cow position: | chr9:42309524-42309845 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 0 |
Conread position: | 30-350 |
Cow position: | chr9:60278180-60277860 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 169 |
Conread position: | 30-351 |
Cow position: | chr9:6051208-6050885 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 246 |
Conread position: | 30-351 |
Cow position: | chr9:16175609-16175930 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 141 |
Conread position: | 30-351 |
Cow position: | chr9:31807375-31807696 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 244 |
Conread position: | 30-351 |
Cow position: | chr9:59455758-59455435 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 246 |
Conread position: | 30-372 |
Cow position: | chr9:59174315-59173976 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 30 |
Conread position: | 30-373 |
Cow position: | chr9:31020650-31021012 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 257 |
Conread position: | 30-422 |
Cow position: | chr9:59482831-59482438 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 78 |
Conread position: | 30-613 |
Cow position: | chr9:3356147-3355570 (view UCSC Genome Browser custom track) |
Alignm length: | 595 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 10 |
Conread position: | 30-646 |
Cow position: | chr9:39992762-39993377 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 454 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 33 |
Conread position: | 30-771 |
Cow position: | chr9:2001561-2000843 (view UCSC Genome Browser custom track) |
Alignm length: | 761 |
Alignm identity: | 531 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 26 |
Conread position: | 37-336 |
Cow position: | chr9:50789526-50789825 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 140 |
Conread position: | 37-351 |
Cow position: | chr9:32968816-32969130 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 218 |
Conread position: | 40-351 |
Cow position: | chr9:2170910-2171222 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 182 |
Conread position: | 41-341 |
Cow position: | chr9:47002040-47002342 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 112 |
Conread position: | 41-433 |
Cow position: | chr9:13477370-13476977 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 160 |
Conread position: | 43-276 |
Cow position: | chr9:1252113-1251887 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 175 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 86, 17 |
Conread position: | 44-340 |
Cow position: | chr9:3542659-3542959 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 233 |
Conread position: | 44-372 |
Cow position: | chr9:59535946-59536279 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 235 |
Conread position: | 45-351 |
Cow position: | chr9:10321666-10321971 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 210 |
Conread position: | 45-372 |
Cow position: | chr9:30672224-30672551 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 136 |
Conread position: | 45-375 |
Cow position: | chr9:29628890-29628560 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 224 |
Conread position: | 45-460 |
Cow position: | chr9:27034555-27034970 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 223 |
Conread position: | 45-590 |
Cow position: | chr9:37095038-37095596 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 243 |
Conread position: | 45-625 |
Cow position: | chr9:3578623-3578072 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 240, 10 |
Conread position: | 60-350 |
Cow position: | chr9:4532362-4532653 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 215 |
Conread position: | 60-768 |
Cow position: | chr9:1635423-1636126 (view UCSC Genome Browser custom track) |
Alignm length: | 724 |
Alignm identity: | 497 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 102 |
Conread position: | 93-581 |
Cow position: | chr9:26710577-26710094 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 58 |
Conread position: | 102-372 |
Cow position: | chr9:64018545-64018272 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 9 |
Conread position: | 105-384 |
Cow position: | chr9:15683852-15684120 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 207 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 28, 38 |
Conread position: | 112-625 |
Cow position: | chr9:6111071-6110566 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 31 |
Conread position: | 143-351 |
Cow position: | chr9:22653521-22653729 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 159 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 141, 131 |
Conread position: | 143-445 |
Cow position: | chr9:44817814-44818116 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 130 |
Conread position: | 151-679 |
Cow position: | chr9:20309568-20309048 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 123 |
Conread position: | 163-352 |
Cow position: | chr9:31064408-31064600 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 146 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 119, 110 |
Conread position: | 164-351 |
Cow position: | chr9:6830524-6830346 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 140 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 109, 0 |
Conread position: | 165-423 |
Cow position: | chr9:16588663-16588402 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 171 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 33, 111 |
Conread position: | 172-351 |
Cow position: | chr9:18509818-18509640 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 136 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 112, 11 |
Conread position: | 172-711 |
Cow position: | chr9:21381923-21381390 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 345 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 30, 82 |
Conread position: | 175-372 |
Cow position: | chr9:2488144-2487941 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 151 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 10, 98 |
Conread position: | 186-331 |
Cow position: | chr9:7002519-7002664 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 114 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 98, 88 |
Conread position: | 201-417 |
Cow position: | chr9:3803052-3803270 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 157 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 14, 76 |
Conread position: | 211-477 |
Cow position: | chr9:13537584-13537857 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 195 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 75, 62 |
Conread position: | 261-756 |
Cow position: | chr9:13222406-13222885 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 13 |
Conread position: | 300-528 |
Cow position: | chr9:2052768-2053001 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 173 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 91, 35 |
Conread position: | 312-741 |
Cow position: | chr9:52571240-52571658 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 7 |
Conread position: | 313-527 |
Cow position: | chr9:2071011-2070799 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 159 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 87, 15 |
Conread position: | 333-536 |
Cow position: | chr9:4984996-4985191 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 145 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 358-521 |
Cow position: | chr9:43663085-43663253 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 127 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 122, 32 |
Conread position: | 370-527 |
Cow position: | chr9:15684947-15685110 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 128 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 395-772 |
Cow position: | chr9:28687876-28688258 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 274 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 84, 190 |
Conread position: | 478-771 |
Cow position: | chr9:240641-240358 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 201 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 9, 24 |
Conread position: | 528-772 |
Cow position: | chr9:44818118-44818350 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 176 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 209, 56 |
Conread position: | 547-765 |
Cow position: | chr9:34721415-34721628 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 155 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 160, 31 |
Show alignments to all cow chromosomes.