Cow genome map

Conread name: Tra1-TCH01H040051

Conread position: 10-323
Cow position: chr9:43662778-43663081 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 13, 54

Conread position: 10-432
Cow position: chr9:35657778-35658186 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 19

Conread position: 13-350
Cow position: chr9:1979808-1980141 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 17

Conread position: 13-411
Cow position: chr9:37971384-37970985 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 79

Conread position: 14-373
Cow position: chr9:3567027-3566667 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 64

Conread position: 14-654
Cow position: chr9:6973952-6974597 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 130

Conread position: 17-350
Cow position: chr9:16268198-16268534 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 259

Conread position: 23-336
Cow position: chr9:3006411-3006097 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 250

Conread position: 23-352
Cow position: chr9:1076364-1076030 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 23-352
Cow position: chr9:25755389-25755056 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-352
Cow position: chr9:30826516-30826849 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 251

Conread position: 23-352
Cow position: chr9:34242763-34242431 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 178

Conread position: 23-386
Cow position: chr9:5424347-5423984 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 252
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 171, 29

Conread position: 23-389
Cow position: chr9:28677810-28678170 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 64

Conread position: 24-333
Cow position: chr9:35317743-35317432 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 69

Conread position: 26-326
Cow position: chr9:4984606-4984910 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 28

Conread position: 26-374
Cow position: chr9:18836847-18837196 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 120

Conread position: 26-402
Cow position: chr9:6757410-6757777 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 66

Conread position: 26-491
Cow position: chr9:26002293-26001853 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 301
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 260, 91

Conread position: 27-336
Cow position: chr9:131359-131041 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 256

Conread position: 27-336
Cow position: chr9:31194329-31194018 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 248

Conread position: 27-336
Cow position: chr9:45873186-45873497 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 248

Conread position: 27-340
Cow position: chr9:3155870-3156175 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 61

Conread position: 27-352
Cow position: chr9:27933932-27934257 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 149

Conread position: 27-373
Cow position: chr9:37129699-37129360 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 58

Conread position: 27-407
Cow position: chr9:42568709-42569088 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 301

Conread position: 27-418
Cow position: chr9:1996075-1995682 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 158

Conread position: 28-773
Cow position: chr9:7012174-7012883 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 482
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 88, 26

Conread position: 29-760
Cow position: chr9:64118668-64119381 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 30-307
Cow position: chr9:37162966-37162687 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 246

Conread position: 30-331
Cow position: chr9:3548331-3548030 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 182

Conread position: 30-331
Cow position: chr9:25023460-25023158 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 30-349
Cow position: chr9:34992223-34992554 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 256

Conread position: 30-350
Cow position: chr9:9012946-9013270 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 247

Conread position: 30-350
Cow position: chr9:42309524-42309845 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 30-350
Cow position: chr9:60278180-60277860 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 169

Conread position: 30-351
Cow position: chr9:6051208-6050885 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 246

Conread position: 30-351
Cow position: chr9:16175609-16175930 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 141

Conread position: 30-351
Cow position: chr9:31807375-31807696 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 244

Conread position: 30-351
Cow position: chr9:59455758-59455435 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 246

Conread position: 30-372
Cow position: chr9:59174315-59173976 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 30

Conread position: 30-373
Cow position: chr9:31020650-31021012 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 257

Conread position: 30-422
Cow position: chr9:59482831-59482438 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 78

Conread position: 30-613
Cow position: chr9:3356147-3355570 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 10

Conread position: 30-646
Cow position: chr9:39992762-39993377 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 33

Conread position: 30-771
Cow position: chr9:2001561-2000843 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 26

Conread position: 37-336
Cow position: chr9:50789526-50789825 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 140

Conread position: 37-351
Cow position: chr9:32968816-32969130 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 218

Conread position: 40-351
Cow position: chr9:2170910-2171222 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 182

Conread position: 41-341
Cow position: chr9:47002040-47002342 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 112

Conread position: 41-433
Cow position: chr9:13477370-13476977 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 160

Conread position: 43-276
Cow position: chr9:1252113-1251887 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 86, 17

Conread position: 44-340
Cow position: chr9:3542659-3542959 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 233

Conread position: 44-372
Cow position: chr9:59535946-59536279 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 235

Conread position: 45-351
Cow position: chr9:10321666-10321971 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 210

Conread position: 45-372
Cow position: chr9:30672224-30672551 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 136

Conread position: 45-375
Cow position: chr9:29628890-29628560 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 224

Conread position: 45-460
Cow position: chr9:27034555-27034970 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 223

Conread position: 45-590
Cow position: chr9:37095038-37095596 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 243

Conread position: 45-625
Cow position: chr9:3578623-3578072 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 10

Conread position: 60-350
Cow position: chr9:4532362-4532653 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 215

Conread position: 60-768
Cow position: chr9:1635423-1636126 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 102

Conread position: 93-581
Cow position: chr9:26710577-26710094 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 58

Conread position: 102-372
Cow position: chr9:64018545-64018272 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 105-384
Cow position: chr9:15683852-15684120 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 38

Conread position: 112-625
Cow position: chr9:6111071-6110566 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 31

Conread position: 143-351
Cow position: chr9:22653521-22653729 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 141, 131

Conread position: 143-445
Cow position: chr9:44817814-44818116 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 130

Conread position: 151-679
Cow position: chr9:20309568-20309048 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 123

Conread position: 163-352
Cow position: chr9:31064408-31064600 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 119, 110

Conread position: 164-351
Cow position: chr9:6830524-6830346 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 109, 0

Conread position: 165-423
Cow position: chr9:16588663-16588402 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 111

Conread position: 172-351
Cow position: chr9:18509818-18509640 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 112, 11

Conread position: 172-711
Cow position: chr9:21381923-21381390 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 345
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 30, 82

Conread position: 175-372
Cow position: chr9:2488144-2487941 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 98

Conread position: 186-331
Cow position: chr9:7002519-7002664 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 98, 88

Conread position: 201-417
Cow position: chr9:3803052-3803270 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 76

Conread position: 211-477
Cow position: chr9:13537584-13537857 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 75, 62

Conread position: 261-756
Cow position: chr9:13222406-13222885 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 13

Conread position: 300-528
Cow position: chr9:2052768-2053001 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 91, 35

Conread position: 312-741
Cow position: chr9:52571240-52571658 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 7

Conread position: 313-527
Cow position: chr9:2071011-2070799 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 15

Conread position: 333-536
Cow position: chr9:4984996-4985191 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 358-521
Cow position: chr9:43663085-43663253 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 32

Conread position: 370-527
Cow position: chr9:15684947-15685110 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 0

Conread position: 395-772
Cow position: chr9:28687876-28688258 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 190

Conread position: 478-771
Cow position: chr9:240641-240358 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 201
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 24

Conread position: 528-772
Cow position: chr9:44818118-44818350 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 209, 56

Conread position: 547-765
Cow position: chr9:34721415-34721628 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 160, 31

Show alignments to all cow chromosomes.