Cow genome map
| Conread name: | Tra1-TCH01H050011 |
| Conread position: | 1-183 |
| Cow position: | chr14:3156302-3156484 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 1-193 |
| Cow position: | chr14:3155645-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 1-224 |
| Cow position: | chr14:25895938-25896161 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-257 |
| Cow position: | chr14:447993-448249 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 143, 153 |
| Conread position: | 1-264 |
| Cow position: | chr14:3060917-3060654 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 148, 157 |
| Conread position: | 1-264 |
| Cow position: | chr14:3156218-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-274 |
| Cow position: | chr14:680711-680984 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 149, 158 |
| Conread position: | 1-274 |
| Cow position: | chr14:3127534-3127260 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 90 |
| Conread position: | 1-276 |
| Cow position: | chr14:434130-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 145, 158 |
| Conread position: | 1-277 |
| Cow position: | chr14:25895266-25895542 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 1-278 |
| Cow position: | chr14:680543-680820 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 147, 154 |
| Conread position: | 1-278 |
| Cow position: | chr14:3061001-3060724 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 228, 238 |
| Conread position: | 1-278 |
| Cow position: | chr14:3080610-3080333 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-278 |
| Cow position: | chr14:25895770-25896047 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 1-278 |
| Cow position: | chr14:25896022-25896299 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 1-280 |
| Cow position: | chr14:447573-447852 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 247, 217 |
| Conread position: | 1-280 |
| Cow position: | chr14:680879-681158 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-280 |
| Cow position: | chr14:3061253-3060974 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 1-280 |
| Cow position: | chr14:3080106-3079827 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-280 |
| Cow position: | chr14:3080190-3079911 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 150, 156 |
| Conread position: | 1-280 |
| Cow position: | chr14:3080694-3080415 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 1-280 |
| Cow position: | chr14:3127954-3127675 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 1-280 |
| Cow position: | chr14:3128122-3127843 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 239, 216 |
| Conread position: | 1-280 |
| Cow position: | chr14:3155477-3155756 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 228, 236 |
| Conread position: | 1-280 |
| Cow position: | chr14:25895098-25895377 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 228, 238 |
| Conread position: | 1-280 |
| Cow position: | chr14:25895602-25895881 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 149, 163 |
| Conread position: | 1-281 |
| Cow position: | chr14:680795-681075 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr14:433962-434244 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 1-283 |
| Cow position: | chr14:447825-448107 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr14:3080526-3080244 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr14:3127870-3127588 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr14:3156134-3156416 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 1-305 |
| Cow position: | chr14:433878-434185 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 149, 158 |
| Conread position: | 1-305 |
| Cow position: | chr14:680459-680766 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 2-278 |
| Cow position: | chr14:3061084-3060808 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 3-280 |
| Cow position: | chr14:25895352-25895629 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 3-285 |
| Cow position: | chr14:434048-434330 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 3-345 |
| Cow position: | chr14:3061335-3060991 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 4-278 |
| Cow position: | chr14:25895437-25895711 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 5-281 |
| Cow position: | chr14:3061165-3060889 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 154 |
| Conread position: | 7-273 |
| Cow position: | chr14:3079932-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 142, 150 |
| Conread position: | 7-278 |
| Cow position: | chr14:25860434-25860705 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 149 |
| Conread position: | 7-278 |
| Cow position: | chr14:25877485-25877756 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 149 |
| Conread position: | 7-280 |
| Cow position: | chr14:3080436-3080163 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 7-280 |
| Cow position: | chr14:25895524-25895797 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 7-283 |
| Cow position: | chr14:680633-680909 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 143, 151 |
| Conread position: | 8-278 |
| Cow position: | chr14:3128031-3127761 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 150 |
| Conread position: | 9-278 |
| Cow position: | chr14:3080938-3080669 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 9-280 |
| Cow position: | chr14:25895022-25895293 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 9-350 |
| Cow position: | chr14:3061665-3061320 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 217, 230 |
| Conread position: | 10-234 |
| Cow position: | chr14:25784261-25784485 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-275 |
| Cow position: | chr14:25783925-25784190 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-277 |
| Cow position: | chr14:3155570-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-278 |
| Cow position: | chr14:3156059-3156327 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-279 |
| Cow position: | chr14:3080265-3079996 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-280 |
| Cow position: | chr14:3127777-3127507 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-283 |
| Cow position: | chr14:3080349-3080076 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 10-285 |
| Cow position: | chr14:3061496-3061221 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 10-331 |
| Cow position: | chr14:3127609-3127284 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 12-280 |
| Cow position: | chr14:25894941-25895209 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 14-283 |
| Cow position: | chr14:3155406-3155675 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 16-278 |
| Cow position: | chr14:433809-434071 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 16-278 |
| Cow position: | chr14:3061742-3061480 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 135, 142 |
| Conread position: | 17-278 |
| Cow position: | chr14:3080762-3080501 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-281 |
| Cow position: | chr14:447927-448189 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 131, 138 |
| Conread position: | 42-281 |
| Cow position: | chr14:3080821-3080582 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-305 |
| Cow position: | chr14:3128160-3127899 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 235, 0 |
Show alignments to all cow chromosomes.