Cow genome map
| Conread name: | Tra1-TCH01H050011 |
| Conread position: | 1-195 |
| Cow position: | chr25:36844470-36844286 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-233 |
| Cow position: | chr25:33127952-33128184 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 209, 204 |
| Conread position: | 1-278 |
| Cow position: | chr25:33157407-33157130 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 150, 156 |
| Conread position: | 1-279 |
| Cow position: | chr25:3636412-3636134 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-279 |
| Cow position: | chr25:25653094-25653372 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 240, 222 |
| Conread position: | 1-279 |
| Cow position: | chr25:34732542-34732264 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-280 |
| Cow position: | chr25:25652254-25652533 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 1-280 |
| Cow position: | chr25:25652338-25652617 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 178, 172 |
| Conread position: | 1-280 |
| Cow position: | chr25:25652506-25652785 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-280 |
| Cow position: | chr25:25652926-25653205 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 1-280 |
| Cow position: | chr25:33127868-33128147 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 1-280 |
| Cow position: | chr25:34770058-34769779 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 157 |
| Conread position: | 1-283 |
| Cow position: | chr25:33157155-33156873 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 150, 157 |
| Conread position: | 1-283 |
| Cow position: | chr25:33157323-33157041 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr25:34769974-34769692 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 1-291 |
| Cow position: | chr25:34473657-34473944 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 227, 197 |
| Conread position: | 1-305 |
| Cow position: | chr25:25652422-25652729 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 156, 146 |
| Conread position: | 1-355 |
| Cow position: | chr25:3676058-3676420 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 220, 231 |
| Conread position: | 9-226 |
| Cow position: | chr25:3664005-3664221 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 139, 149 |
| Conread position: | 10-234 |
| Cow position: | chr25:34769545-34769321 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 145 |
| Conread position: | 10-264 |
| Cow position: | chr25:34447097-34447351 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 141, 146 |
| Conread position: | 10-278 |
| Cow position: | chr25:34769629-34769361 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 138, 145 |
| Conread position: | 10-278 |
| Cow position: | chr25:34769797-34769529 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 10-280 |
| Cow position: | chr25:3664090-3664360 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 147, 134 |
| Conread position: | 10-280 |
| Cow position: | chr25:25652683-25652953 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 10-280 |
| Cow position: | chr25:33127793-33128063 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-280 |
| Cow position: | chr25:33298638-33298908 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-281 |
| Cow position: | chr25:25652599-25652870 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 10-283 |
| Cow position: | chr25:33157230-33156957 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-283 |
| Cow position: | chr25:34769881-34769608 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-283 |
| Cow position: | chr25:3663928-3664195 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 200, 181 |
| Conread position: | 16-283 |
| Cow position: | chr25:33299148-33299415 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 210, 235 |
| Conread position: | 19-280 |
| Cow position: | chr25:36801543-36801804 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 220, 198 |
| Conread position: | 43-280 |
| Cow position: | chr25:34733985-34733748 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 72-278 |
| Cow position: | chr25:33157504-33157298 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-283 |
| Cow position: | chr25:33157420-33157209 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 86 |
| Conread position: | 97-280 |
| Cow position: | chr25:34732614-34732431 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 120 |
Show alignments to all cow chromosomes.