Cow genome map
| Conread name: | Utr1-UTR010021H10 |
| Conread position: | 1-224 |
| Cow position: | chr1:75933393-75933160 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 3-112 |
| Cow position: | chr1:82371071-82370957 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 3-126 |
| Cow position: | chr1:54289068-54289199 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-131 |
| Cow position: | chr1:71782544-71782675 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 3-190 |
| Cow position: | chr1:70533815-70534015 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 3-191 |
| Cow position: | chr1:15902618-15902414 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-192 |
| Cow position: | chr1:69415587-69415791 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 3-192 |
| Cow position: | chr1:72732164-72731959 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 3-192 |
| Cow position: | chr1:76096556-76096359 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 3-196 |
| Cow position: | chr1:18414344-18414537 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 3-196 |
| Cow position: | chr1:29975481-29975685 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 3-196 |
| Cow position: | chr1:31189990-31190191 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 3-196 |
| Cow position: | chr1:31390464-31390674 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-196 |
| Cow position: | chr1:50345669-50345460 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 3-196 |
| Cow position: | chr1:59132093-59132294 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 3-196 |
| Cow position: | chr1:85141612-85141813 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 3-196 |
| Cow position: | chr1:95764970-95765172 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 3-197 |
| Cow position: | chr1:96339861-96339668 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 3-226 |
| Cow position: | chr1:78791185-78791416 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 83, 206 |
| Conread position: | 4-196 |
| Cow position: | chr1:90868324-90868523 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 4-211 |
| Cow position: | chr1:24406774-24406992 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-144 |
| Cow position: | chr1:38205596-38205452 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 5-173 |
| Cow position: | chr1:39121715-39121899 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 5-195 |
| Cow position: | chr1:26531460-26531668 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 5-196 |
| Cow position: | chr1:23100022-23099817 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 5-196 |
| Cow position: | chr1:30442078-30441874 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 182 |
| Conread position: | 5-219 |
| Cow position: | chr1:53039588-53039803 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 5-227 |
| Cow position: | chr1:46006083-46006305 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 5-228 |
| Cow position: | chr1:63504454-63504222 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 6-190 |
| Cow position: | chr1:44746980-44746788 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 6-190 |
| Cow position: | chr1:58825662-58825465 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 6-190 |
| Cow position: | chr1:74946998-74947199 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 6-192 |
| Cow position: | chr1:90422962-90423162 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 6-193 |
| Cow position: | chr1:22910474-22910294 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 6-196 |
| Cow position: | chr1:75347745-75347539 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 6-198 |
| Cow position: | chr1:64189621-64189413 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 7-196 |
| Cow position: | chr1:48083847-48083642 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 7-227 |
| Cow position: | chr1:62732689-62732463 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 8-191 |
| Cow position: | chr1:21934064-21934253 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 8-192 |
| Cow position: | chr1:41735501-41735702 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 8-192 |
| Cow position: | chr1:75998349-75998536 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 8-224 |
| Cow position: | chr1:19466170-19465944 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 28-191 |
| Cow position: | chr1:48769896-48769726 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 28-224 |
| Cow position: | chr1:43703503-43703295 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 30-224 |
| Cow position: | chr1:70026253-70026456 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 34-196 |
| Cow position: | chr1:99807629-99807803 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 35-224 |
| Cow position: | chr1:95215103-95215294 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 95 |
| Conread position: | 36-191 |
| Cow position: | chr1:73196143-73196311 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 37-192 |
| Cow position: | chr1:50045885-50045722 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 37-227 |
| Cow position: | chr1:36932239-36932043 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 39-223 |
| Cow position: | chr1:42555349-42555152 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.