Cow genome map

Conread name: Utr1-UTR010022D12

Conread position: 92-236
Cow position: chr1:28801645-28801491 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 92-284
Cow position: chr1:69536690-69536884 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 65

Conread position: 96-236
Cow position: chr1:89740458-89740312 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 96-242
Cow position: chr1:1461542-1461388 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 96-242
Cow position: chr1:40307852-40308003 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 96-242
Cow position: chr1:88635160-88635310 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 96-295
Cow position: chr1:87207626-87207422 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 82, 60

Conread position: 96-303
Cow position: chr1:18406405-18406188 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 62, 173

Conread position: 96-303
Cow position: chr1:38414593-38414805 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 12

Conread position: 96-303
Cow position: chr1:82918873-82918657 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 103

Conread position: 96-303
Cow position: chr1:87244584-87244798 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 60

Conread position: 96-303
Cow position: chr1:89899916-89899697 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 12

Conread position: 96-317
Cow position: chr1:42290177-42290413 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 176

Conread position: 96-328
Cow position: chr1:97123618-97123853 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 12

Conread position: 96-352
Cow position: chr1:40513712-40513457 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 161

Conread position: 96-358
Cow position: chr1:89770896-89770634 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 36

Conread position: 97-243
Cow position: chr1:67286276-67286429 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 58, 108

Conread position: 104-245
Cow position: chr1:55323729-55323578 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 200-805
Cow position: chr1:61309501-61310110 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 191
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 21, 13

Conread position: 242-813
Cow position: chr1:69922131-69921536 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 41

Conread position: 244-813
Cow position: chr1:66999342-66999910 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 20

Conread position: 249-808
Cow position: chr1:31365769-31365196 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 64

Conread position: 250-808
Cow position: chr1:17941474-17940901 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 43

Conread position: 252-411
Cow position: chr1:21720529-21720694 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 21

Conread position: 252-500
Cow position: chr1:85780462-85780204 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 43

Conread position: 252-501
Cow position: chr1:72981585-72981844 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-507
Cow position: chr1:22344236-22344491 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 9

Conread position: 252-555
Cow position: chr1:40512729-40512418 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 117

Conread position: 252-572
Cow position: chr1:85882320-85882649 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 40, 30

Conread position: 252-620
Cow position: chr1:57366814-57366422 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 30

Conread position: 252-639
Cow position: chr1:30519008-30519414 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 54, 21

Conread position: 252-647
Cow position: chr1:18027452-18027028 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-664
Cow position: chr1:69403298-69403733 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 25

Conread position: 252-760
Cow position: chr1:65386646-65387172 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-801
Cow position: chr1:99913735-99914310 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-804
Cow position: chr1:62244329-62243750 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-808
Cow position: chr1:71562262-71561679 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 252-813
Cow position: chr1:12061895-12061315 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:21999639-21999055 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:28873392-28873979 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:30534706-30534119 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:33551242-33551825 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-813
Cow position: chr1:42736770-42737356 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 252-813
Cow position: chr1:58336153-58336736 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:67287156-67287719 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 26

Conread position: 252-813
Cow position: chr1:72186563-72185983 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 32

Conread position: 252-813
Cow position: chr1:73070738-73070157 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:76545220-76544637 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 252-813
Cow position: chr1:76752335-76751747 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 30

Conread position: 252-813
Cow position: chr1:79456654-79456071 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 252-813
Cow position: chr1:88131089-88131672 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:91892805-91892217 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:93854839-93855415 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 30

Conread position: 252-813
Cow position: chr1:94660000-94660573 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr1:102434721-102434139 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-837
Cow position: chr1:52358959-52358345 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 30

Conread position: 253-771
Cow position: chr1:29609352-29608828 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 353
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 133

Conread position: 254-493
Cow position: chr1:89770337-89770094 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 35, 17

Conread position: 254-689
Cow position: chr1:40684378-40683927 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 254-714
Cow position: chr1:17012426-17011941 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 443

Conread position: 254-721
Cow position: chr1:23052110-23052578 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 144

Conread position: 254-774
Cow position: chr1:55321821-55321295 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 17

Conread position: 254-809
Cow position: chr1:63605460-63604881 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 28

Conread position: 254-813
Cow position: chr1:28711229-28711790 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 294

Conread position: 254-813
Cow position: chr1:56144017-56143438 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 254-813
Cow position: chr1:86547822-86547243 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 108

Conread position: 255-616
Cow position: chr1:86698897-86698517 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 36

Conread position: 255-628
Cow position: chr1:58883747-58883354 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 16

Conread position: 255-760
Cow position: chr1:25179710-25179183 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 27

Conread position: 255-760
Cow position: chr1:40053668-40054198 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 139

Conread position: 255-760
Cow position: chr1:82923859-82923343 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 256

Conread position: 255-808
Cow position: chr1:63502183-63502722 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 355
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 127, 16

Conread position: 255-808
Cow position: chr1:72081099-72081660 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 255-808
Cow position: chr1:79636614-79636087 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 60

Conread position: 255-813
Cow position: chr1:3385700-3385126 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 255-813
Cow position: chr1:8554641-8555227 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 556

Conread position: 255-813
Cow position: chr1:8825370-8825946 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 106

Conread position: 255-813
Cow position: chr1:48246165-48246731 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 27

Conread position: 255-813
Cow position: chr1:49973870-49973289 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 256-455
Cow position: chr1:33712385-33712596 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 168

Conread position: 256-694
Cow position: chr1:97226390-97225933 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 254

Conread position: 256-747
Cow position: chr1:29033436-29033952 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 349
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 46, 187

Conread position: 256-760
Cow position: chr1:57424524-57423997 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 256-760
Cow position: chr1:102549556-102550067 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 163

Conread position: 256-805
Cow position: chr1:82652968-82653554 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 538

Conread position: 256-808
Cow position: chr1:82912829-82912244 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 467

Conread position: 256-813
Cow position: chr1:11291791-11291214 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 205

Conread position: 256-813
Cow position: chr1:20829204-20829809 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 256-813
Cow position: chr1:21087728-21088312 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 256-813
Cow position: chr1:22842967-22843540 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 132

Conread position: 256-813
Cow position: chr1:39544084-39544664 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 245

Conread position: 256-813
Cow position: chr1:69766777-69767353 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 337

Conread position: 256-813
Cow position: chr1:85792001-85792577 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 127

Conread position: 256-813
Cow position: chr1:91899311-91899916 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 257-607
Cow position: chr1:72943862-72944223 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 14

Conread position: 258-672
Cow position: chr1:31403178-31402735 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 53, 238

Conread position: 260-837
Cow position: chr1:31418191-31417595 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 12

Conread position: 263-533
Cow position: chr1:24651615-24651889 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 264-441
Cow position: chr1:61309343-61309520 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 169, 26

Conread position: 264-648
Cow position: chr1:32662061-32662480 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 281
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 122

Conread position: 266-720
Cow position: chr1:34692557-34693020 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 112

Conread position: 267-459
Cow position: chr1:30283217-30283015 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 267-807
Cow position: chr1:29034627-29035181 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 259

Conread position: 267-813
Cow position: chr1:5355452-5356025 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 273-813
Cow position: chr1:43571069-43570519 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 274-680
Cow position: chr1:17036224-17035795 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 92

Conread position: 274-813
Cow position: chr1:56490183-56490750 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 274-813
Cow position: chr1:82564836-82565401 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 497

Conread position: 274-813
Cow position: chr1:89425906-89426472 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 278-807
Cow position: chr1:77511592-77511049 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 12

Conread position: 279-808
Cow position: chr1:68607194-68606648 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 34

Conread position: 279-813
Cow position: chr1:15026709-15027260 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 31

Conread position: 280-813
Cow position: chr1:88269866-88269338 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 105

Conread position: 305-813
Cow position: chr1:80358808-80358283 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 5

Conread position: 308-413
Cow position: chr1:76622526-76622421 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 310-534
Cow position: chr1:18013120-18012897 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 215, 123

Conread position: 310-536
Cow position: chr1:18242956-18242729 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 123, 177

Conread position: 310-572
Cow position: chr1:18880016-18879743 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 123, 155

Conread position: 310-646
Cow position: chr1:9382172-9381819 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 123, 66

Conread position: 310-654
Cow position: chr1:80665240-80665580 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 233
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 147, 65

Conread position: 310-703
Cow position: chr1:28278349-28278755 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 283
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 67, 143

Conread position: 310-752
Cow position: chr1:82366562-82367020 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 8

Conread position: 310-756
Cow position: chr1:31811461-31811894 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 305
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 114, 51

Conread position: 310-758
Cow position: chr1:77111640-77111191 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 296
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 49

Conread position: 310-791
Cow position: chr1:52325756-52325264 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 334
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 222, 64

Conread position: 310-805
Cow position: chr1:31397067-31397582 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 415

Conread position: 310-808
Cow position: chr1:40574590-40575107 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 310-808
Cow position: chr1:53198926-53199432 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 288

Conread position: 310-808
Cow position: chr1:95239746-95240262 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 183

Conread position: 310-813
Cow position: chr1:5502348-5502865 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 301

Conread position: 310-813
Cow position: chr1:13450583-13451103 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 80

Conread position: 310-813
Cow position: chr1:29362673-29363196 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 156

Conread position: 310-813
Cow position: chr1:56163927-56164447 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 32

Conread position: 310-813
Cow position: chr1:56723531-56724054 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 443

Conread position: 310-813
Cow position: chr1:59209774-59209251 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 310-813
Cow position: chr1:60339682-60340198 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 73

Conread position: 310-813
Cow position: chr1:67834764-67834241 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 384

Conread position: 311-615
Cow position: chr1:91751085-91750766 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 311-813
Cow position: chr1:26518503-26517987 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 122

Conread position: 312-813
Cow position: chr1:25550344-25550860 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 171

Conread position: 314-760
Cow position: chr1:40308656-40309105 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 250

Conread position: 316-813
Cow position: chr1:33851668-33852184 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 316-813
Cow position: chr1:55776971-55777482 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 11

Conread position: 316-824
Cow position: chr1:89481175-89481673 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 11

Conread position: 317-808
Cow position: chr1:11860852-11860355 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 144

Conread position: 319-760
Cow position: chr1:55156615-55156148 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 401

Conread position: 326-812
Cow position: chr1:84150593-84151086 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 180

Conread position: 326-813
Cow position: chr1:56937637-56937123 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 341
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 54, 144

Conread position: 343-703
Cow position: chr1:57263399-57263762 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 10

Conread position: 350-699
Cow position: chr1:16217234-16216878 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 237
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 6, 95

Conread position: 366-606
Cow position: chr1:58178552-58178300 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 375-813
Cow position: chr1:44044224-44044681 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 377-813
Cow position: chr1:6194683-6195133 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 377-814
Cow position: chr1:91445950-91446363 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 287
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 148, 39

Conread position: 378-813
Cow position: chr1:98659436-98659009 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 31

Conread position: 383-791
Cow position: chr1:1460734-1460341 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 145

Conread position: 383-813
Cow position: chr1:9258946-9259377 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 263

Conread position: 388-813
Cow position: chr1:57568391-57568834 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 221

Conread position: 394-813
Cow position: chr1:86610609-86611045 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 304
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 43, 73

Conread position: 402-797
Cow position: chr1:76621214-76620797 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 34, 0

Conread position: 405-813
Cow position: chr1:33896214-33896641 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 419-813
Cow position: chr1:24443834-24443432 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 444-813
Cow position: chr1:79111007-79111390 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 268
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 48

Conread position: 448-697
Cow position: chr1:29979662-29979406 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 82, 236

Conread position: 455-721
Cow position: chr1:101862360-101862087 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 70, 7

Conread position: 456-758
Cow position: chr1:33712620-33712936 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 463-813
Cow position: chr1:57662554-57662923 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 14, 174

Conread position: 478-753
Cow position: chr1:44100843-44100562 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 48

Conread position: 504-813
Cow position: chr1:62805595-62805282 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 21, 215

Conread position: 508-808
Cow position: chr1:72984085-72984396 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 17, 299

Conread position: 527-813
Cow position: chr1:49495619-49495326 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 530-797
Cow position: chr1:72038945-72038676 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 26

Conread position: 531-758
Cow position: chr1:20423123-20422888 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 531-813
Cow position: chr1:88564190-88563906 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 109, 35

Conread position: 531-815
Cow position: chr1:22344694-22344979 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 57

Conread position: 541-837
Cow position: chr1:81863884-81863586 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 54, 261

Conread position: 558-758
Cow position: chr1:85779801-85779596 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 0

Conread position: 558-802
Cow position: chr1:18241875-18241628 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 566-781
Cow position: chr1:40512367-40512148 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 155

Conread position: 567-802
Cow position: chr1:89770061-89769820 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 227

Conread position: 583-758
Cow position: chr1:22620265-22620083 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 162

Conread position: 594-813
Cow position: chr1:38416565-38416787 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 46, 135

Conread position: 611-808
Cow position: chr1:58883090-58882889 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 85

Conread position: 612-813
Cow position: chr1:18015970-18016168 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 110

Show alignments to all cow chromosomes.