Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 96-246 |
| Cow position: | chr13:13046307-13046152 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 96-302 |
| Cow position: | chr13:34143144-34142926 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 96-303 |
| Cow position: | chr13:2908931-2908718 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 168 |
| Conread position: | 96-303 |
| Cow position: | chr13:20542849-20542636 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 96-303 |
| Cow position: | chr13:31832121-31832332 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 96-303 |
| Cow position: | chr13:62328069-62327852 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 173 |
| Conread position: | 96-328 |
| Cow position: | chr13:30657448-30657212 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 145 |
| Conread position: | 96-346 |
| Cow position: | chr13:33825215-33824952 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 173 |
| Conread position: | 96-358 |
| Cow position: | chr13:34326163-34325897 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 187 |
| Conread position: | 103-242 |
| Cow position: | chr13:34187168-34187021 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 103-303 |
| Cow position: | chr13:34692682-34692895 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 103-303 |
| Cow position: | chr13:54284109-54284313 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 119-303 |
| Cow position: | chr13:56730743-56730551 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 235-760 |
| Cow position: | chr13:1593128-1592579 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 249-828 |
| Cow position: | chr13:31734048-31733445 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 252-616 |
| Cow position: | chr13:33336373-33335999 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-648 |
| Cow position: | chr13:9044546-9044965 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr13:3654278-3653692 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr13:4483840-4484425 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr13:15924338-15923752 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr13:30238289-30238865 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 385 |
| Conread position: | 252-813 |
| Cow position: | chr13:32737776-32737196 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 253-797 |
| Cow position: | chr13:35757289-35757858 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 254-405 |
| Cow position: | chr13:48357610-48357768 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 254-615 |
| Cow position: | chr13:4941136-4941512 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 254-653 |
| Cow position: | chr13:27922183-27921770 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 185 |
| Conread position: | 254-791 |
| Cow position: | chr13:43983032-43982482 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 254-805 |
| Cow position: | chr13:22185189-22184645 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 368 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 59, 98 |
| Conread position: | 254-813 |
| Cow position: | chr13:34325517-34324932 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 390 |
| Conread position: | 255-681 |
| Cow position: | chr13:34042321-34041875 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 255-807 |
| Cow position: | chr13:30303324-30303905 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 255-813 |
| Cow position: | chr13:23003260-23002679 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 255-815 |
| Cow position: | chr13:20541991-20541417 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 475 |
| Conread position: | 256-489 |
| Cow position: | chr13:11064118-11063885 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 256-490 |
| Cow position: | chr13:22766073-22766318 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 58, 210 |
| Conread position: | 256-533 |
| Cow position: | chr13:46731668-46731395 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 256-655 |
| Cow position: | chr13:34868791-34869212 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 256-765 |
| Cow position: | chr13:34048674-34049204 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 352 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 256-774 |
| Cow position: | chr13:34937538-34938066 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 196 |
| Conread position: | 256-813 |
| Cow position: | chr13:30244636-30244053 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 399 |
| Conread position: | 257-760 |
| Cow position: | chr13:6668070-6667542 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 258-550 |
| Cow position: | chr13:26844148-26844441 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 265-515 |
| Cow position: | chr13:29202302-29202039 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 265-813 |
| Cow position: | chr13:49973735-49974304 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 409 |
| Conread position: | 267-590 |
| Cow position: | chr13:3058057-3057714 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 267-645 |
| Cow position: | chr13:676930-677330 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 40 |
| Conread position: | 271-478 |
| Cow position: | chr13:2296756-2296542 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 272-813 |
| Cow position: | chr13:50109519-50110079 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 119 |
| Conread position: | 274-654 |
| Cow position: | chr13:13324809-13325204 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 324 |
| Conread position: | 274-813 |
| Cow position: | chr13:47229941-47229377 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 414 |
| Conread position: | 282-611 |
| Cow position: | chr13:19413299-19413627 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 299-778 |
| Cow position: | chr13:15451010-15450524 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 11 |
| Conread position: | 310-555 |
| Cow position: | chr13:34911053-34910807 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 310-758 |
| Cow position: | chr13:30656869-30656411 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 44 |
| Conread position: | 310-813 |
| Cow position: | chr13:2388714-2388187 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-813 |
| Cow position: | chr13:15520389-15519879 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 310-813 |
| Cow position: | chr13:17308579-17309100 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 310-813 |
| Cow position: | chr13:21840094-21839572 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-813 |
| Cow position: | chr13:31612198-31611679 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 334 |
| Conread position: | 310-813 |
| Cow position: | chr13:32545487-32546008 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 420 |
| Conread position: | 310-813 |
| Cow position: | chr13:32985242-32984723 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-813 |
| Cow position: | chr13:57023812-57024326 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 336 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 310-813 |
| Cow position: | chr13:58118803-58118282 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 310-813 |
| Cow position: | chr13:60466441-60466954 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 311-772 |
| Cow position: | chr13:41315964-41316443 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 312-787 |
| Cow position: | chr13:43855759-43856256 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 312-815 |
| Cow position: | chr13:35030659-35031167 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 70 |
| Conread position: | 315-704 |
| Cow position: | chr13:28672096-28671701 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 344-813 |
| Cow position: | chr13:13900010-13900496 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 143 |
| Conread position: | 371-610 |
| Cow position: | chr13:5625908-5625662 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 142, 62 |
| Conread position: | 389-638 |
| Cow position: | chr13:34766655-34766410 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 150, 27 |
| Conread position: | 399-590 |
| Cow position: | chr13:18331607-18331810 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 435-777 |
| Cow position: | chr13:12063719-12063359 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 483-808 |
| Cow position: | chr13:16255095-16254761 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 540-809 |
| Cow position: | chr13:60700310-60700043 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 583-756 |
| Cow position: | chr13:25692088-25692263 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 5, 166 |
| Conread position: | 594-813 |
| Cow position: | chr13:3056731-3056508 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 605-760 |
| Cow position: | chr13:5625576-5625422 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 611-760 |
| Cow position: | chr13:4941811-4941963 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 613-813 |
| Cow position: | chr13:33335886-33335688 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 135 |
Show alignments to all cow chromosomes.