Cow genome map

Conread name: Utr1-UTR010022D12

Conread position: 91-216
Cow position: chr16:10808205-10808334 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 92-281
Cow position: chr16:25157177-25156983 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 61, 175

Conread position: 92-358
Cow position: chr16:25084662-25084929 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 64, 176

Conread position: 96-242
Cow position: chr16:19713804-19713651 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 96-242
Cow position: chr16:29676262-29676108 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 96-242
Cow position: chr16:56551172-56551326 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 96-284
Cow position: chr16:2411926-2411731 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 173

Conread position: 96-303
Cow position: chr16:20255267-20255047 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 154

Conread position: 97-328
Cow position: chr16:36362303-36362068 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 159

Conread position: 97-331
Cow position: chr16:16687914-16688161 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 159

Conread position: 100-303
Cow position: chr16:39820686-39820894 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 167

Conread position: 103-303
Cow position: chr16:6549471-6549260 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 166

Conread position: 108-303
Cow position: chr16:49257512-49257321 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 178, 48

Conread position: 112-242
Cow position: chr16:23670531-23670397 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 240-454
Cow position: chr16:18687567-18687341 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 250-612
Cow position: chr16:2239169-2238801 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 150

Conread position: 252-606
Cow position: chr16:5483899-5484269 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-628
Cow position: chr16:15184379-15184763 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-647
Cow position: chr16:23252931-23252516 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 30

Conread position: 252-760
Cow position: chr16:10437817-10438343 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-772
Cow position: chr16:23982886-23983423 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-802
Cow position: chr16:10203854-10203297 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 25

Conread position: 252-812
Cow position: chr16:25257511-25258106 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 215

Conread position: 252-813
Cow position: chr16:8816528-8815945 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 18

Conread position: 252-813
Cow position: chr16:12538349-12537763 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-813
Cow position: chr16:25085218-25085778 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 12

Conread position: 252-813
Cow position: chr16:25441200-25441788 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 30

Conread position: 252-813
Cow position: chr16:25457889-25457302 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 30

Conread position: 252-813
Cow position: chr16:26663325-26663911 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr16:27734216-27733630 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 30

Conread position: 252-813
Cow position: chr16:29046598-29047184 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 30

Conread position: 252-813
Cow position: chr16:40296602-40296015 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr16:43897695-43897114 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 253-813
Cow position: chr16:23807998-23808599 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 253-813
Cow position: chr16:29033625-29034212 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 254-506
Cow position: chr16:18764045-18763786 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 36, 154

Conread position: 254-533
Cow position: chr16:25156299-25156010 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 254-610
Cow position: chr16:42739515-42739154 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 17

Conread position: 254-615
Cow position: chr16:53045924-53046308 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 254-616
Cow position: chr16:16272019-16271651 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 18

Conread position: 254-616
Cow position: chr16:49235254-49234870 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 254-758
Cow position: chr16:25341544-25342060 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 254-813
Cow position: chr16:2411390-2410805 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 255-648
Cow position: chr16:15566320-15566735 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 255-760
Cow position: chr16:407453-406927 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 255-813
Cow position: chr16:1567876-1567291 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 255-813
Cow position: chr16:2483564-2482978 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 89

Conread position: 255-813
Cow position: chr16:2727710-2727127 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 400

Conread position: 255-813
Cow position: chr16:28471524-28470940 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 98

Conread position: 255-813
Cow position: chr16:31592329-31591758 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 411

Conread position: 255-813
Cow position: chr16:34529900-34530474 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 7

Conread position: 256-397
Cow position: chr16:1431736-1431885 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 256-527
Cow position: chr16:5890102-5890372 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 77, 31

Conread position: 256-808
Cow position: chr16:5661422-5662000 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 135

Conread position: 257-774
Cow position: chr16:9930515-9931055 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 20

Conread position: 265-808
Cow position: chr16:25188222-25188804 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 232

Conread position: 267-590
Cow position: chr16:31832215-31832558 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 274-813
Cow position: chr16:10375988-10375439 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 167

Conread position: 297-555
Cow position: chr16:36232117-36231853 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 155

Conread position: 300-533
Cow position: chr16:18498689-18498453 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 11, 131

Conread position: 310-665
Cow position: chr16:25892359-25892726 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 252
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 128, 51

Conread position: 310-689
Cow position: chr16:48915512-48915120 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 254
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 102, 61

Conread position: 310-713
Cow position: chr16:32373-32792 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 310-808
Cow position: chr16:29090641-29090134 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 328
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 76, 89

Conread position: 310-808
Cow position: chr16:41163425-41162916 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 310-812
Cow position: chr16:25170992-25171509 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 85

Conread position: 310-813
Cow position: chr16:836686-837210 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 417

Conread position: 310-813
Cow position: chr16:4302697-4302179 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 50

Conread position: 310-813
Cow position: chr16:14666172-14665649 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 302

Conread position: 310-813
Cow position: chr16:28170730-28170210 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 33

Conread position: 311-715
Cow position: chr16:24105346-24105764 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 45

Conread position: 319-648
Cow position: chr16:15492878-15493221 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 278

Conread position: 331-649
Cow position: chr16:25738161-25738465 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 46

Conread position: 341-813
Cow position: chr16:4479312-4478822 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 345-813
Cow position: chr16:15476518-15477002 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 214

Conread position: 345-813
Cow position: chr16:28198004-28197516 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 372-748
Cow position: chr16:15237447-15237811 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 54

Conread position: 379-600
Cow position: chr16:6943312-6943548 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 384-837
Cow position: chr16:30049211-30049664 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 22

Conread position: 391-813
Cow position: chr16:1431907-1432348 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 280

Conread position: 405-813
Cow position: chr16:37456290-37455851 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 392

Conread position: 407-813
Cow position: chr16:49256457-49256060 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 101

Conread position: 442-757
Cow position: chr16:43852343-43852032 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 85, 22

Conread position: 464-758
Cow position: chr16:19152083-19151779 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 61, 218

Conread position: 466-813
Cow position: chr16:28377016-28377379 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 468-813
Cow position: chr16:11283110-11283471 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 485-813
Cow position: chr16:41166946-41166609 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 496-747
Cow position: chr16:26374422-26374686 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 504-805
Cow position: chr16:21185454-21185767 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 21, 291

Conread position: 513-726
Cow position: chr16:20753177-20752957 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 74, 22

Conread position: 522-838
Cow position: chr16:18498427-18498110 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 8, 44

Conread position: 530-813
Cow position: chr16:23536018-23535730 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 54, 241

Conread position: 560-713
Cow position: chr16:36231881-36231725 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 47

Conread position: 607-813
Cow position: chr16:16271188-16270979 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 33, 165

Conread position: 609-813
Cow position: chr16:39367426-39367219 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 54

Conread position: 611-813
Cow position: chr16:15185031-15185233 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 29, 41

Show alignments to all cow chromosomes.