Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 92-246 |
| Cow position: | chr17:16889741-16889903 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 92-303 |
| Cow position: | chr17:22429866-22429642 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 181 |
| Conread position: | 96-247 |
| Cow position: | chr17:20183605-20183448 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-293 |
| Cow position: | chr17:15370698-15370901 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 96-303 |
| Cow position: | chr17:23857412-23857196 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 96-313 |
| Cow position: | chr17:28109707-28109934 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 96-323 |
| Cow position: | chr17:14325873-14325636 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 96-332 |
| Cow position: | chr17:1284137-1283900 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 230-813 |
| Cow position: | chr17:6119846-6120445 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 249-803 |
| Cow position: | chr17:3708625-3708066 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 250-663 |
| Cow position: | chr17:20665582-20665145 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 432 |
| Conread position: | 252-521 |
| Cow position: | chr17:19269212-19268935 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 252-608 |
| Cow position: | chr17:15850551-15850929 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-664 |
| Cow position: | chr17:4060248-4060681 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 252-813 |
| Cow position: | chr17:2579769-2580355 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr17:14040876-14040304 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 252-813 |
| Cow position: | chr17:14894307-14894894 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr17:18103531-18102954 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 253-426 |
| Cow position: | chr17:25737818-25737997 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 253-648 |
| Cow position: | chr17:42265072-42265472 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 253-805 |
| Cow position: | chr17:1657688-1657127 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 253-813 |
| Cow position: | chr17:40804972-40805542 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 254-431 |
| Cow position: | chr17:24634102-24634287 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-758 |
| Cow position: | chr17:15384434-15384950 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 288 |
| Conread position: | 254-760 |
| Cow position: | chr17:1382666-1382140 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-760 |
| Cow position: | chr17:18300240-18299717 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 254-813 |
| Cow position: | chr17:20087587-20087017 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 255-813 |
| Cow position: | chr17:6068716-6069287 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-813 |
| Cow position: | chr17:6260000-6260590 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 255-813 |
| Cow position: | chr17:11087568-11086989 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-813 |
| Cow position: | chr17:24029844-24029271 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 182 |
| Conread position: | 256-813 |
| Cow position: | chr17:1880248-1880831 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 139 |
| Conread position: | 256-813 |
| Cow position: | chr17:8209256-8209841 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 256-813 |
| Cow position: | chr17:22132385-22132959 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 339 |
| Conread position: | 259-652 |
| Cow position: | chr17:14307912-14307492 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 22, 189 |
| Conread position: | 265-759 |
| Cow position: | chr17:4082227-4082721 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 343 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 6 |
| Conread position: | 265-807 |
| Cow position: | chr17:3642670-3642105 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 267-813 |
| Cow position: | chr17:31767878-31767308 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 283-813 |
| Cow position: | chr17:15324011-15324562 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 283-813 |
| Cow position: | chr17:19019755-19020305 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 298-723 |
| Cow position: | chr17:151670-151232 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 299-590 |
| Cow position: | chr17:2174090-2174377 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 133, 25 |
| Conread position: | 302-813 |
| Cow position: | chr17:250371-250895 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 8 |
| Conread position: | 310-485 |
| Cow position: | chr17:14051898-14051720 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 310-514 |
| Cow position: | chr17:43952351-43952144 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-627 |
| Cow position: | chr17:13695774-13695448 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 127, 105 |
| Conread position: | 310-760 |
| Cow position: | chr17:17130069-17130544 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 310-808 |
| Cow position: | chr17:14216814-14216305 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 123 |
| Conread position: | 310-808 |
| Cow position: | chr17:16857306-16856790 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 76 |
| Conread position: | 310-808 |
| Cow position: | chr17:23324242-23323725 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 310-813 |
| Cow position: | chr17:228096-227579 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 384 |
| Conread position: | 310-813 |
| Cow position: | chr17:2262314-2262837 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 310-813 |
| Cow position: | chr17:5226835-5227351 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 184 |
| Conread position: | 310-813 |
| Cow position: | chr17:15143155-15142624 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 272 |
| Conread position: | 310-813 |
| Cow position: | chr17:15156753-15156236 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 143 |
| Conread position: | 310-813 |
| Cow position: | chr17:24782379-24782891 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 104 |
| Conread position: | 310-813 |
| Cow position: | chr17:34156340-34156851 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 288 |
| Conread position: | 311-610 |
| Cow position: | chr17:11376571-11376257 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 311-614 |
| Cow position: | chr17:20183652-20183951 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 311-795 |
| Cow position: | chr17:18194043-18194527 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 289 |
| Conread position: | 311-813 |
| Cow position: | chr17:15436004-15436525 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 358-809 |
| Cow position: | chr17:20402669-20403151 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 275 |
| Conread position: | 358-813 |
| Cow position: | chr17:43988762-43989231 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 61 |
| Conread position: | 392-739 |
| Cow position: | chr17:9081146-9080782 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 410-808 |
| Cow position: | chr17:11783162-11783571 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 191 |
| Conread position: | 425-813 |
| Cow position: | chr17:2247741-2247336 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 441-805 |
| Cow position: | chr17:6001099-6000716 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 452-813 |
| Cow position: | chr17:28018767-28019121 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 489-813 |
| Cow position: | chr17:181694-182032 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 530-760 |
| Cow position: | chr17:14238903-14239138 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 213 |
| Conread position: | 530-813 |
| Cow position: | chr17:19268390-19268096 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 532-811 |
| Cow position: | chr17:15371403-15371696 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 25, 199 |
| Conread position: | 542-807 |
| Cow position: | chr17:2174299-2174568 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 546-805 |
| Cow position: | chr17:21417469-21417736 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 550-813 |
| Cow position: | chr17:20100009-20099744 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 561-813 |
| Cow position: | chr17:3655820-3655561 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 611-813 |
| Cow position: | chr17:15851219-15851425 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.