Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 92-246 |
| Cow position: | chr18:51310407-51310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 92-284 |
| Cow position: | chr18:54172019-54171820 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 177 |
| Conread position: | 93-313 |
| Cow position: | chr18:48221703-48221935 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 96-273 |
| Cow position: | chr18:39748410-39748591 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-284 |
| Cow position: | chr18:16078531-16078724 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 171 |
| Conread position: | 96-284 |
| Cow position: | chr18:53785669-53785862 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 58, 171 |
| Conread position: | 96-302 |
| Cow position: | chr18:23944543-23944328 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 96-303 |
| Cow position: | chr18:43147096-43146878 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 61, 173 |
| Conread position: | 96-312 |
| Cow position: | chr18:2019855-2019629 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 96-359 |
| Cow position: | chr18:17992733-17992457 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 233-615 |
| Cow position: | chr18:8169048-8169448 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 252-612 |
| Cow position: | chr18:37505425-37505801 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 252-648 |
| Cow position: | chr18:51481196-51481614 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 252-689 |
| Cow position: | chr18:27987425-27987885 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 252-807 |
| Cow position: | chr18:36508694-36509275 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:14416337-14416927 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:16176256-16175674 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 252-813 |
| Cow position: | chr18:23798009-23798591 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 252-813 |
| Cow position: | chr18:25351110-25351698 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:27837955-27837368 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:28973541-28972942 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:32652564-32653159 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:40478744-40479331 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:41840463-41839866 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr18:54171176-54170593 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 254-642 |
| Cow position: | chr18:29765333-29765746 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 254-724 |
| Cow position: | chr18:22602843-22603336 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 181 |
| Conread position: | 254-808 |
| Cow position: | chr18:33750378-33750948 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 108 |
| Conread position: | 254-813 |
| Cow position: | chr18:14130754-14131335 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 254-813 |
| Cow position: | chr18:33953219-33952638 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 148 |
| Conread position: | 255-813 |
| Cow position: | chr18:33336226-33336818 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 255-813 |
| Cow position: | chr18:52651283-52651854 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 274 |
| Conread position: | 255-815 |
| Cow position: | chr18:54023761-54023191 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 256-380 |
| Cow position: | chr18:24700748-24700616 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 256-535 |
| Cow position: | chr18:54003885-54004165 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 256-688 |
| Cow position: | chr18:25363586-25364036 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 256-813 |
| Cow position: | chr18:16088511-16089083 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 256-813 |
| Cow position: | chr18:51342044-51342627 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 257-813 |
| Cow position: | chr18:33269191-33269763 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 109 |
| Conread position: | 267-760 |
| Cow position: | chr18:19352751-19353258 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 310-778 |
| Cow position: | chr18:54270934-54271408 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 127 |
| Conread position: | 310-808 |
| Cow position: | chr18:11274686-11274169 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-808 |
| Cow position: | chr18:24040312-24039788 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 310-808 |
| Cow position: | chr18:51462659-51462152 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 33 |
| Conread position: | 310-813 |
| Cow position: | chr18:51660767-51661283 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 154 |
| Conread position: | 310-813 |
| Cow position: | chr18:55088504-55087978 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 311-718 |
| Cow position: | chr18:16721899-16721481 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 311-775 |
| Cow position: | chr18:51276577-51276107 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 313-744 |
| Cow position: | chr18:51238722-51239169 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 316-813 |
| Cow position: | chr18:16079104-16079609 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 320-644 |
| Cow position: | chr18:15855828-15856163 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 108, 171 |
| Conread position: | 336-649 |
| Cow position: | chr18:55991290-55990980 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 103, 49 |
| Conread position: | 360-652 |
| Cow position: | chr18:36256748-36256451 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 165, 73 |
| Conread position: | 442-739 |
| Cow position: | chr18:51275477-51275170 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 236 |
| Conread position: | 500-702 |
| Cow position: | chr18:29237559-29237765 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 5, 122 |
| Conread position: | 550-760 |
| Cow position: | chr18:56035530-56035743 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 551-808 |
| Cow position: | chr18:40725983-40725720 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 594-723 |
| Cow position: | chr18:1209414-1209546 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 611-813 |
| Cow position: | chr18:37506697-37506903 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 620-808 |
| Cow position: | chr18:32768408-32768595 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 8 |
Show alignments to all cow chromosomes.