Cow genome map

Conread name: Utr1-UTR010022D12

Conread position: 96-236
Cow position: chr20:3252344-3252196 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 96-246
Cow position: chr20:5483980-5484139 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 34

Conread position: 96-284
Cow position: chr20:15064558-15064755 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 96-361
Cow position: chr20:4799856-4799593 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 83, 60

Conread position: 234-805
Cow position: chr20:10855041-10854460 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 42

Conread position: 238-523
Cow position: chr20:3271010-3271302 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 19, 30

Conread position: 252-617
Cow position: chr20:8003903-8003519 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-655
Cow position: chr20:28161093-28161519 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-664
Cow position: chr20:12438438-12438006 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 252-808
Cow position: chr20:15292333-15292903 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-808
Cow position: chr20:23799208-23799784 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 252-813
Cow position: chr20:5535260-5535840 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr20:13763227-13763813 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr20:15097554-15096975 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 30

Conread position: 252-813
Cow position: chr20:18314987-18314443 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 142

Conread position: 252-813
Cow position: chr20:21914650-21915225 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr20:23469343-23468757 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr20:28565273-28564684 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 25

Conread position: 252-813
Cow position: chr20:30684643-30685224 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 252-813
Cow position: chr20:35124818-35125401 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 252-816
Cow position: chr20:27869520-27870112 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 254-612
Cow position: chr20:31377871-31377510 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 82, 56

Conread position: 254-808
Cow position: chr20:29948824-29949404 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 254-813
Cow position: chr20:10840385-10839811 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 45

Conread position: 255-412
Cow position: chr20:10845797-10845630 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 255-447
Cow position: chr20:42076736-42076543 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 58, 122

Conread position: 255-625
Cow position: chr20:25850666-25850279 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 255-647
Cow position: chr20:16179496-16179077 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 217

Conread position: 255-802
Cow position: chr20:13679708-13679149 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 16

Conread position: 256-644
Cow position: chr20:21393919-21394328 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 256-813
Cow position: chr20:19438258-19438821 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 185

Conread position: 263-809
Cow position: chr20:8992889-8992313 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 383

Conread position: 267-802
Cow position: chr20:25961433-25961989 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 413

Conread position: 267-813
Cow position: chr20:38351008-38351579 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 163

Conread position: 271-441
Cow position: chr20:19352882-19353050 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 163, 39

Conread position: 285-623
Cow position: chr20:2790549-2790196 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 28, 113

Conread position: 291-813
Cow position: chr20:42905575-42906103 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 30

Conread position: 310-521
Cow position: chr20:7115099-7114885 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 123, 0

Conread position: 310-813
Cow position: chr20:823148-823665 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 310-813
Cow position: chr20:8215906-8216419 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 291

Conread position: 310-813
Cow position: chr20:22697656-22698168 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 67

Conread position: 310-817
Cow position: chr20:18324787-18324276 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 341
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 78, 86

Conread position: 312-547
Cow position: chr20:22716940-22716705 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 121

Conread position: 368-612
Cow position: chr20:15065713-15065968 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 68, 0

Conread position: 371-813
Cow position: chr20:12568967-12569426 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 382

Conread position: 385-813
Cow position: chr20:8974354-8973913 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 143

Conread position: 396-801
Cow position: chr20:14870476-14870054 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 118

Conread position: 429-555
Cow position: chr20:20931049-20931180 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 7, 0

Conread position: 434-813
Cow position: chr20:24616348-24615963 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 109

Conread position: 442-760
Cow position: chr20:17661557-17661225 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 442-813
Cow position: chr20:13434066-13433694 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 259
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 83, 115

Conread position: 447-833
Cow position: chr20:19355305-19355689 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 68, 144

Conread position: 466-760
Cow position: chr20:13664903-13664593 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 221

Conread position: 508-812
Cow position: chr20:22207716-22208028 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 24, 36

Conread position: 515-813
Cow position: chr20:37580813-37581115 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 78, 294

Conread position: 530-807
Cow position: chr20:7113575-7113289 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 530-813
Cow position: chr20:37442692-37442391 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 126

Conread position: 590-813
Cow position: chr20:10102017-10101797 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 100

Conread position: 610-821
Cow position: chr20:15066183-15066398 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 30, 181

Conread position: 611-813
Cow position: chr20:25850128-25849922 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 618-813
Cow position: chr20:28161526-28161725 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.