Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 70-813 |
| Cow position: | chr21:5016030-5015289 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 536 |
| Conread position: | 93-317 |
| Cow position: | chr21:2476604-2476375 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 96-303 |
| Cow position: | chr21:34292927-34293145 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 96-313 |
| Cow position: | chr21:34259304-34259082 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 96-316 |
| Cow position: | chr21:13124087-13123862 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 171 |
| Conread position: | 96-350 |
| Cow position: | chr21:4222779-4222508 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 175 |
| Conread position: | 96-352 |
| Cow position: | chr21:7267628-7267378 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 119 |
| Conread position: | 96-356 |
| Cow position: | chr21:3615202-3615466 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 96-358 |
| Cow position: | chr21:1292264-1292007 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 99-284 |
| Cow position: | chr21:2416150-2416340 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 52, 184 |
| Conread position: | 103-310 |
| Cow position: | chr21:35596284-35596503 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 107-303 |
| Cow position: | chr21:2789072-2788863 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 208-813 |
| Cow position: | chr21:37371650-37372257 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 249-804 |
| Cow position: | chr21:23602991-23603552 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 252-626 |
| Cow position: | chr21:27565835-27566237 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 252-648 |
| Cow position: | chr21:31559214-31558804 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 252-672 |
| Cow position: | chr21:23812617-23813056 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 252-686 |
| Cow position: | chr21:30562244-30562695 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 252-702 |
| Cow position: | chr21:9892382-9892816 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 58 |
| Conread position: | 252-812 |
| Cow position: | chr21:28735670-28736270 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 215 |
| Conread position: | 252-813 |
| Cow position: | chr21:29521-30097 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 252-813 |
| Cow position: | chr21:2883307-2882718 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr21:10567110-10567696 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr21:10850519-10851100 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr21:30599484-30598901 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 252-813 |
| Cow position: | chr21:35144198-35144777 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-837 |
| Cow position: | chr21:2540642-2540042 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 253-490 |
| Cow position: | chr21:20744065-20743823 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 41, 185 |
| Conread position: | 253-572 |
| Cow position: | chr21:359809-360136 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 254-526 |
| Cow position: | chr21:26650477-26650761 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-597 |
| Cow position: | chr21:33251950-33252308 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 254-616 |
| Cow position: | chr21:27282830-27283213 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 254-654 |
| Cow position: | chr21:2476105-2475681 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-673 |
| Cow position: | chr21:11406560-11406116 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-707 |
| Cow position: | chr21:4091085-4091562 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 254-805 |
| Cow position: | chr21:13313209-13313771 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 254-813 |
| Cow position: | chr21:146366-146949 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 254-813 |
| Cow position: | chr21:11453220-11452637 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-813 |
| Cow position: | chr21:37046056-37046642 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-824 |
| Cow position: | chr21:23861762-23862352 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 222 |
| Conread position: | 255-634 |
| Cow position: | chr21:21925882-21925487 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 255-757 |
| Cow position: | chr21:2710948-2711452 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 199 |
| Conread position: | 255-758 |
| Cow position: | chr21:4589547-4589031 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 255-777 |
| Cow position: | chr21:48116545-48117082 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-802 |
| Cow position: | chr21:21915130-21915699 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 255-807 |
| Cow position: | chr21:467333-467892 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 255-808 |
| Cow position: | chr21:4093948-4094519 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 255-808 |
| Cow position: | chr21:40271237-40270657 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 255-809 |
| Cow position: | chr21:3779210-3779784 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 294 |
| Conread position: | 256-571 |
| Cow position: | chr21:21517965-21518294 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 256-813 |
| Cow position: | chr21:4077282-4077853 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 258-591 |
| Cow position: | chr21:7267091-7266739 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 289 |
| Conread position: | 258-813 |
| Cow position: | chr21:2416660-2417236 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 267-813 |
| Cow position: | chr21:12055552-12054984 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 301-628 |
| Cow position: | chr21:27070769-27070428 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 9 |
| Conread position: | 310-532 |
| Cow position: | chr21:1689719-1689490 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 310-555 |
| Cow position: | chr21:25975778-25976028 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 310-598 |
| Cow position: | chr21:18819663-18819358 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 123, 179 |
| Conread position: | 310-616 |
| Cow position: | chr21:2511395-2511716 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-805 |
| Cow position: | chr21:39425563-39426074 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 66 |
| Conread position: | 310-808 |
| Cow position: | chr21:1287718-1287203 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 72 |
| Conread position: | 310-811 |
| Cow position: | chr21:47941359-47941876 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 90 |
| Conread position: | 310-813 |
| Cow position: | chr21:47949566-47950081 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 310-821 |
| Cow position: | chr21:11506096-11506623 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 208 |
| Conread position: | 312-772 |
| Cow position: | chr21:6622092-6622570 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 100 |
| Conread position: | 313-812 |
| Cow position: | chr21:37148540-37149052 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 319-805 |
| Cow position: | chr21:39087518-39088016 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 35 |
| Conread position: | 319-808 |
| Cow position: | chr21:1192267-1192775 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 377-767 |
| Cow position: | chr21:2502437-2502841 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 248 |
| Conread position: | 383-813 |
| Cow position: | chr21:26637624-26637183 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 404-813 |
| Cow position: | chr21:18817956-18817534 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 25 |
| Conread position: | 418-813 |
| Cow position: | chr21:21944139-21943744 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 162, 15 |
| Conread position: | 442-813 |
| Cow position: | chr21:25782276-25782660 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 458-813 |
| Cow position: | chr21:4184562-4184924 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 467-813 |
| Cow position: | chr21:5840606-5840244 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 473-813 |
| Cow position: | chr21:46916340-46916695 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 489-813 |
| Cow position: | chr21:27149594-27149931 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 495-813 |
| Cow position: | chr21:28256127-28256453 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 517-751 |
| Cow position: | chr21:445834-446081 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 560-813 |
| Cow position: | chr21:26743418-26743168 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 200, 84 |
| Conread position: | 565-813 |
| Cow position: | chr21:37719250-37719000 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 76, 95 |
| Conread position: | 566-838 |
| Cow position: | chr21:20743807-20743544 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 587-758 |
| Cow position: | chr21:217844-218017 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 611-809 |
| Cow position: | chr21:27070153-27069951 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 29, 171 |
| Conread position: | 611-813 |
| Cow position: | chr21:26402674-26402468 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 611-813 |
| Cow position: | chr21:33252991-33253196 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.