Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 92-313 |
| Cow position: | chr23:31595446-31595223 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 159 |
| Conread position: | 92-352 |
| Cow position: | chr23:988909-988647 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 179 |
| Conread position: | 96-242 |
| Cow position: | chr23:4276694-4276844 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 96-242 |
| Cow position: | chr23:8980753-8980603 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-303 |
| Cow position: | chr23:5779349-5779131 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 96-303 |
| Cow position: | chr23:5875036-5874819 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-313 |
| Cow position: | chr23:2765643-2765422 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 162 |
| Conread position: | 102-313 |
| Cow position: | chr23:22875890-22875668 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 104-303 |
| Cow position: | chr23:7273401-7273602 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 110-242 |
| Cow position: | chr23:1330536-1330400 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 249-571 |
| Cow position: | chr23:4434716-4435057 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 250-572 |
| Cow position: | chr23:17786061-17785721 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 250-813 |
| Cow position: | chr23:14974300-14973722 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 199 |
| Conread position: | 252-388 |
| Cow position: | chr23:30636032-30635890 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-526 |
| Cow position: | chr23:15525879-15526164 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 252-527 |
| Cow position: | chr23:25683773-25683486 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 227 |
| Conread position: | 252-555 |
| Cow position: | chr23:11778757-11779071 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-607 |
| Cow position: | chr23:14965483-14965106 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-648 |
| Cow position: | chr23:2757863-2758282 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-807 |
| Cow position: | chr23:19489811-19490380 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 252-813 |
| Cow position: | chr23:4640355-4639774 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr23:27399772-27400355 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 252-813 |
| Cow position: | chr23:28913662-28914242 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 252-813 |
| Cow position: | chr23:36031108-36030527 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 253-808 |
| Cow position: | chr23:2716659-2717236 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 254-468 |
| Cow position: | chr23:9545852-9546069 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 254-653 |
| Cow position: | chr23:2341360-2341781 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 254-678 |
| Cow position: | chr23:4752869-4753304 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 307 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 254-775 |
| Cow position: | chr23:31447078-31447623 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 531 |
| Conread position: | 254-813 |
| Cow position: | chr23:23830229-23830809 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 111 |
| Conread position: | 255-468 |
| Cow position: | chr23:2026848-2026620 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 255-638 |
| Cow position: | chr23:16616574-16616170 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 255-693 |
| Cow position: | chr23:967078-966612 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-713 |
| Cow position: | chr23:1402224-1401762 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 255-787 |
| Cow position: | chr23:4510348-4510889 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 143 |
| Conread position: | 255-809 |
| Cow position: | chr23:15177342-15177917 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 255-813 |
| Cow position: | chr23:4888944-4889531 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-813 |
| Cow position: | chr23:15219625-15219055 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 256-469 |
| Cow position: | chr23:2574807-2575029 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 256-552 |
| Cow position: | chr23:31594976-31594672 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 214 |
| Conread position: | 256-654 |
| Cow position: | chr23:3014663-3015086 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 387 |
| Conread position: | 256-681 |
| Cow position: | chr23:2781942-2781501 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 336 |
| Conread position: | 256-813 |
| Cow position: | chr23:29452045-29451493 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 256-815 |
| Cow position: | chr23:16615166-16614587 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 257-509 |
| Cow position: | chr23:22146981-22146718 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 258-631 |
| Cow position: | chr23:20302478-20302864 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 233 |
| Conread position: | 258-813 |
| Cow position: | chr23:20155941-20155371 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 259-622 |
| Cow position: | chr23:15877492-15877114 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 264-704 |
| Cow position: | chr23:5874362-5873916 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 164 |
| Conread position: | 267-801 |
| Cow position: | chr23:28217566-28218127 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 274-813 |
| Cow position: | chr23:19950303-19949752 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 278 |
| Conread position: | 297-813 |
| Cow position: | chr23:4817337-4817869 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 305-642 |
| Cow position: | chr23:27169459-27169806 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 310-612 |
| Cow position: | chr23:26836998-26837299 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 44 |
| Conread position: | 310-624 |
| Cow position: | chr23:2794902-2794576 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 32 |
| Conread position: | 310-654 |
| Cow position: | chr23:1024690-1024325 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 47 |
| Conread position: | 310-758 |
| Cow position: | chr23:14948408-14947952 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 127, 62 |
| Conread position: | 310-813 |
| Cow position: | chr23:2312912-2312394 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 310-813 |
| Cow position: | chr23:3880722-3880234 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 42 |
| Conread position: | 312-815 |
| Cow position: | chr23:4360158-4360658 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 185 |
| Conread position: | 314-813 |
| Cow position: | chr23:13509995-13510504 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 81 |
| Conread position: | 343-689 |
| Cow position: | chr23:7364304-7364649 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 348-813 |
| Cow position: | chr23:27970905-27971388 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 365 |
| Conread position: | 349-760 |
| Cow position: | chr23:28077739-28078161 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 84 |
| Conread position: | 349-813 |
| Cow position: | chr23:28025035-28025517 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 364 |
| Conread position: | 349-813 |
| Cow position: | chr23:28108028-28108499 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 149 |
| Conread position: | 350-813 |
| Cow position: | chr23:28368153-28367675 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 322 |
| Conread position: | 377-578 |
| Cow position: | chr23:22874788-22874585 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 397-808 |
| Cow position: | chr23:619021-618617 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 36 |
| Conread position: | 435-629 |
| Cow position: | chr23:12887523-12887327 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 444-813 |
| Cow position: | chr23:3706586-3706968 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 451-813 |
| Cow position: | chr23:2026610-2026231 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 510-813 |
| Cow position: | chr23:15526112-15526416 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 516-775 |
| Cow position: | chr23:10157728-10157994 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 252 |
| Conread position: | 551-813 |
| Cow position: | chr23:11779366-11779631 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 218 |
| Conread position: | 558-808 |
| Cow position: | chr23:22146709-22146455 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 594-813 |
| Cow position: | chr23:31594462-31594241 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 619-759 |
| Cow position: | chr23:12887059-12886917 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 619-787 |
| Cow position: | chr23:22943688-22943516 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 619-812 |
| Cow position: | chr23:7336771-7336973 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 619-813 |
| Cow position: | chr23:14778510-14778314 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 639-813 |
| Cow position: | chr23:16498556-16498381 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 125, 60 |
Show alignments to all cow chromosomes.