Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 96-215 |
| Cow position: | chr24:17187367-17187494 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 96-358 |
| Cow position: | chr24:6145181-6145447 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 177 |
| Conread position: | 96-358 |
| Cow position: | chr24:6645239-6645511 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 170 |
| Conread position: | 225-785 |
| Cow position: | chr24:6538294-6538860 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 375 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 211, 24 |
| Conread position: | 230-459 |
| Cow position: | chr24:16084320-16084090 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 251-577 |
| Cow position: | chr24:16472248-16472593 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 252-424 |
| Cow position: | chr24:17313189-17313017 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 252-476 |
| Cow position: | chr24:6336205-6336442 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 252-709 |
| Cow position: | chr24:17696623-17696144 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 252-760 |
| Cow position: | chr24:148264-147731 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-807 |
| Cow position: | chr24:12205953-12205380 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 252-808 |
| Cow position: | chr24:6669794-6669220 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 252-808 |
| Cow position: | chr24:12335420-12334830 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-808 |
| Cow position: | chr24:29187638-29188219 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr24:12086553-12087140 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 193 |
| Conread position: | 252-813 |
| Cow position: | chr24:19833740-19834325 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr24:22971445-22972024 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 252-813 |
| Cow position: | chr24:36559407-36558839 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 252-818 |
| Cow position: | chr24:12237588-12238180 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 253-444 |
| Cow position: | chr24:37217367-37217562 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 253-808 |
| Cow position: | chr24:4415175-4414603 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 254-524 |
| Cow position: | chr24:12232619-12232351 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 153 |
| Conread position: | 254-533 |
| Cow position: | chr24:14333822-14334110 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 254-638 |
| Cow position: | chr24:16648631-16648224 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 174 |
| Conread position: | 254-770 |
| Cow position: | chr24:6048946-6049443 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 343 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 254-808 |
| Cow position: | chr24:12484968-12484389 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 254-813 |
| Cow position: | chr24:38637895-38638472 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 287 |
| Conread position: | 255-390 |
| Cow position: | chr24:12162212-12162353 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 255-589 |
| Cow position: | chr24:9091928-9091574 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 255-611 |
| Cow position: | chr24:40549223-40549594 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 255-630 |
| Cow position: | chr24:12130617-12130226 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 256-500 |
| Cow position: | chr24:7090812-7090556 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 256-813 |
| Cow position: | chr24:43814115-43814697 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 257-808 |
| Cow position: | chr24:33933725-33934301 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 513 |
| Conread position: | 261-578 |
| Cow position: | chr24:7061759-7062087 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 267-492 |
| Cow position: | chr24:6434600-6434838 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 267-802 |
| Cow position: | chr24:6646062-6646624 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 267-813 |
| Cow position: | chr24:44017895-44018467 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 360 |
| Conread position: | 272-808 |
| Cow position: | chr24:14390186-14389614 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 376 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 274-650 |
| Cow position: | chr24:22793541-22793945 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 274-813 |
| Cow position: | chr24:29305954-29305387 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 302-731 |
| Cow position: | chr24:14754597-14754150 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 438 |
| Conread position: | 310-444 |
| Cow position: | chr24:13533111-13532979 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 310-577 |
| Cow position: | chr24:14872545-14872266 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 310-590 |
| Cow position: | chr24:12796795-12796518 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 120 |
| Conread position: | 310-616 |
| Cow position: | chr24:33738927-33738605 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 310-721 |
| Cow position: | chr24:1449673-1450084 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 90 |
| Conread position: | 310-808 |
| Cow position: | chr24:6024690-6024175 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 38 |
| Conread position: | 310-808 |
| Cow position: | chr24:6084484-6084997 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-813 |
| Cow position: | chr24:5992816-5992294 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 399 |
| Conread position: | 310-813 |
| Cow position: | chr24:9188318-9187800 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 123 |
| Conread position: | 310-813 |
| Cow position: | chr24:13188586-13189105 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-816 |
| Cow position: | chr24:6660082-6659555 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 311-654 |
| Cow position: | chr24:23185048-23184703 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 226 |
| Conread position: | 314-758 |
| Cow position: | chr24:6145850-6146274 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 319-813 |
| Cow position: | chr24:23505440-23504931 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 336-813 |
| Cow position: | chr24:9544504-9544998 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 352-807 |
| Cow position: | chr24:12110236-12109780 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 30 |
| Conread position: | 376-654 |
| Cow position: | chr24:6328834-6328539 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 378-809 |
| Cow position: | chr24:6059380-6059829 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 394-813 |
| Cow position: | chr24:19702003-19702418 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 404-813 |
| Cow position: | chr24:12700312-12699883 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 433-818 |
| Cow position: | chr24:13321714-13322099 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 454-813 |
| Cow position: | chr24:6065156-6064791 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 70, 148 |
| Conread position: | 465-712 |
| Cow position: | chr24:11866903-11866643 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 465-830 |
| Cow position: | chr24:8030860-8031243 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 470-813 |
| Cow position: | chr24:6435052-6435412 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 531-775 |
| Cow position: | chr24:44325998-44326250 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-803 |
| Cow position: | chr24:7090323-7090048 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 531-838 |
| Cow position: | chr24:36709003-36709314 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 538-788 |
| Cow position: | chr24:21960302-21960042 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 544-813 |
| Cow position: | chr24:14383932-14383659 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 551-808 |
| Cow position: | chr24:12162586-12162839 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 562-815 |
| Cow position: | chr24:28210407-28210147 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 581-813 |
| Cow position: | chr24:6406721-6406963 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 600-802 |
| Cow position: | chr24:12129347-12129145 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 605-818 |
| Cow position: | chr24:35869908-35869696 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 35, 112 |
| Conread position: | 626-809 |
| Cow position: | chr24:6332954-6332765 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 646-805 |
| Cow position: | chr24:40193279-40193438 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 111 |
Show alignments to all cow chromosomes.