Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 96-242 |
| Cow position: | chr28:24652071-24652225 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 96-258 |
| Cow position: | chr28:5812490-5812660 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 96-311 |
| Cow position: | chr28:2989902-2989681 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 96-313 |
| Cow position: | chr28:1387610-1387385 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 96-338 |
| Cow position: | chr28:8721662-8721414 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 96-340 |
| Cow position: | chr28:4381037-4380789 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 107 |
| Conread position: | 96-341 |
| Cow position: | chr28:15681673-15681928 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 98-304 |
| Cow position: | chr28:21358802-21359009 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 53 |
| Conread position: | 103-284 |
| Cow position: | chr28:9953922-9954113 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 103-350 |
| Cow position: | chr28:9155498-9155250 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 166 |
| Conread position: | 242-532 |
| Cow position: | chr28:8720987-8720694 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 250-710 |
| Cow position: | chr28:1953433-1953920 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 252-426 |
| Cow position: | chr28:14705358-14705177 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-518 |
| Cow position: | chr28:29820047-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-533 |
| Cow position: | chr28:3020438-3020149 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 252-533 |
| Cow position: | chr28:10581671-10581379 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 252-555 |
| Cow position: | chr28:2083907-2084221 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-555 |
| Cow position: | chr28:14913830-14914136 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 252-599 |
| Cow position: | chr28:34594292-34594660 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 252-613 |
| Cow position: | chr28:782708-783087 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 252-722 |
| Cow position: | chr28:7740794-7741273 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-747 |
| Cow position: | chr28:10497703-10497209 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 145 |
| Conread position: | 252-760 |
| Cow position: | chr28:2988929-2988397 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 252-797 |
| Cow position: | chr28:1387092-1386513 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 252-797 |
| Cow position: | chr28:7789639-7789068 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 252-804 |
| Cow position: | chr28:22260838-22260266 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 252-807 |
| Cow position: | chr28:12409915-12409337 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-808 |
| Cow position: | chr28:5751392-5750810 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:1167568-1166982 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 252-813 |
| Cow position: | chr28:1814554-1813969 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:5113985-5113402 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:5937789-5938379 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:13460283-13460868 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:26425938-26425361 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:32792067-32791481 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr28:33252625-33253198 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 254-439 |
| Cow position: | chr28:10617507-10617321 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 254-760 |
| Cow position: | chr28:5566460-5566994 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 254-760 |
| Cow position: | chr28:17666982-17666463 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 254-813 |
| Cow position: | chr28:1505180-1505764 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 254-813 |
| Cow position: | chr28:10647064-10646505 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 254-813 |
| Cow position: | chr28:17388798-17389376 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 255-400 |
| Cow position: | chr28:21359653-21359806 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 255-610 |
| Cow position: | chr28:5813324-5813702 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 255-680 |
| Cow position: | chr28:5798062-5798504 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 255-813 |
| Cow position: | chr28:7002306-7002890 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 255-813 |
| Cow position: | chr28:12150619-12151200 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 256-757 |
| Cow position: | chr28:485253-484740 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 256-813 |
| Cow position: | chr28:10071600-10072169 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 106 |
| Conread position: | 256-813 |
| Cow position: | chr28:22233090-22232527 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 350 |
| Conread position: | 258-815 |
| Cow position: | chr28:6656200-6655645 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 266-813 |
| Cow position: | chr28:6780008-6779444 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 267-813 |
| Cow position: | chr28:14750867-14751438 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 274-645 |
| Cow position: | chr28:7822585-7822980 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 274-805 |
| Cow position: | chr28:6538934-6538377 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 351 |
| Conread position: | 276-813 |
| Cow position: | chr28:24667946-24668514 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 288-744 |
| Cow position: | chr28:33258996-33259462 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 307-801 |
| Cow position: | chr28:5765136-5765626 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 308-813 |
| Cow position: | chr28:18520070-18519555 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 103 |
| Conread position: | 310-540 |
| Cow position: | chr28:24588461-24588696 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 310-623 |
| Cow position: | chr28:10229844-10229524 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 310-759 |
| Cow position: | chr28:28473025-28473486 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 310-778 |
| Cow position: | chr28:14195315-14194831 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 165 |
| Conread position: | 310-813 |
| Cow position: | chr28:2724551-2724029 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 310-813 |
| Cow position: | chr28:10872573-10873073 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 124, 182 |
| Conread position: | 310-813 |
| Cow position: | chr28:24589223-24589746 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 404 |
| Conread position: | 311-491 |
| Cow position: | chr28:7882019-7881837 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 122, 93 |
| Conread position: | 311-492 |
| Cow position: | chr28:24704878-24705055 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 126, 74 |
| Conread position: | 312-655 |
| Cow position: | chr28:7708490-7708138 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 312-776 |
| Cow position: | chr28:18100843-18100360 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 65 |
| Conread position: | 312-813 |
| Cow position: | chr28:3191866-3191361 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 338-492 |
| Cow position: | chr28:7880928-7881085 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 355-809 |
| Cow position: | chr28:21359898-21360375 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 367-663 |
| Cow position: | chr28:8379268-8379579 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 379-600 |
| Cow position: | chr28:7810945-7811165 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 404-638 |
| Cow position: | chr28:10617318-10617077 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 413-718 |
| Cow position: | chr28:32627247-32626950 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 418-813 |
| Cow position: | chr28:14704904-14704493 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 435-683 |
| Cow position: | chr28:15683789-15684035 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 442-813 |
| Cow position: | chr28:18147239-18146862 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 505-813 |
| Cow position: | chr28:15035509-15035202 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 520-813 |
| Cow position: | chr28:3020121-3019823 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 530-760 |
| Cow position: | chr28:29820607-29820845 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 532-687 |
| Cow position: | chr28:7881838-7881679 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 543-813 |
| Cow position: | chr28:5814009-5814269 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 583-810 |
| Cow position: | chr28:11490843-11490615 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 175 |
Show alignments to all cow chromosomes.