Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 96-236 |
| Cow position: | chr29:27041014-27040870 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 96-303 |
| Cow position: | chr29:11049030-11049246 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 96-328 |
| Cow position: | chr29:35196422-35196662 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 161 |
| Conread position: | 97-242 |
| Cow position: | chr29:12796718-12796566 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 230-809 |
| Cow position: | chr29:23900963-23901540 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 9 |
| Conread position: | 252-504 |
| Cow position: | chr29:410246-409986 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 252-522 |
| Cow position: | chr29:6266222-6265941 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-578 |
| Cow position: | chr29:19653387-19653739 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-620 |
| Cow position: | chr29:23976119-23976503 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-648 |
| Cow position: | chr29:19622968-19622551 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-648 |
| Cow position: | chr29:32540089-32540501 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 252-704 |
| Cow position: | chr29:48201-47719 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 252-760 |
| Cow position: | chr29:2690179-2690711 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-760 |
| Cow position: | chr29:45587086-45586571 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 252-802 |
| Cow position: | chr29:45459995-45460570 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-807 |
| Cow position: | chr29:14586201-14586774 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 252-813 |
| Cow position: | chr29:2100124-2100708 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 252-813 |
| Cow position: | chr29:7430940-7430359 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 252-813 |
| Cow position: | chr29:10647972-10647387 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr29:14085857-14085269 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 215 |
| Conread position: | 252-813 |
| Cow position: | chr29:16022809-16023398 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr29:34799531-34798945 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 252-813 |
| Cow position: | chr29:38227259-38227838 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr29:39079433-39078846 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 252-813 |
| Cow position: | chr29:40502705-40502118 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 252-813 |
| Cow position: | chr29:43322833-43323419 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-815 |
| Cow position: | chr29:20251438-20252026 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 254-608 |
| Cow position: | chr29:15949269-15948906 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 254-612 |
| Cow position: | chr29:802646-802276 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 254-813 |
| Cow position: | chr29:15894577-15893991 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-813 |
| Cow position: | chr29:25932265-25931681 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 222 |
| Conread position: | 255-813 |
| Cow position: | chr29:9643477-9642902 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 255-813 |
| Cow position: | chr29:10823688-10823114 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 241 |
| Conread position: | 255-813 |
| Cow position: | chr29:21426749-21426165 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 392 |
| Conread position: | 256-482 |
| Cow position: | chr29:42650547-42650785 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 256-602 |
| Cow position: | chr29:42802407-42802776 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 256-713 |
| Cow position: | chr29:35297149-35297610 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 287 |
| Conread position: | 256-813 |
| Cow position: | chr29:610337-609763 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 256-813 |
| Cow position: | chr29:669782-669199 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 205 |
| Conread position: | 256-813 |
| Cow position: | chr29:19885345-19885926 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 135 |
| Conread position: | 256-813 |
| Cow position: | chr29:26164540-26163967 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 257-808 |
| Cow position: | chr29:5957887-5958457 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 257-813 |
| Cow position: | chr29:2841090-2840518 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 99 |
| Conread position: | 258-800 |
| Cow position: | chr29:4634115-4633557 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 378 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 267-813 |
| Cow position: | chr29:5982419-5981855 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 267-813 |
| Cow position: | chr29:15968575-15968002 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 267-813 |
| Cow position: | chr29:27980633-27980065 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 535 |
| Conread position: | 267-813 |
| Cow position: | chr29:31181701-31182263 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 273-757 |
| Cow position: | chr29:3698298-3698802 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 333 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 274-609 |
| Cow position: | chr29:7844624-7844982 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 274-813 |
| Cow position: | chr29:27250049-27249484 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 274-813 |
| Cow position: | chr29:34925772-34926337 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 305-815 |
| Cow position: | chr29:13582401-13582940 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 310-545 |
| Cow position: | chr29:16110753-16110991 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 123, 44 |
| Conread position: | 310-687 |
| Cow position: | chr29:105370-105767 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 310-775 |
| Cow position: | chr29:16174539-16174063 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 126, 80 |
| Conread position: | 310-813 |
| Cow position: | chr29:18856606-18856089 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 406 |
| Conread position: | 311-709 |
| Cow position: | chr29:36598247-36597831 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 172 |
| Conread position: | 317-813 |
| Cow position: | chr29:9619768-9620278 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 325-759 |
| Cow position: | chr29:6212893-6213328 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 78, 208 |
| Conread position: | 325-801 |
| Cow position: | chr29:3177232-3176752 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 326-654 |
| Cow position: | chr29:7856863-7857200 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 335-532 |
| Cow position: | chr29:2950892-2950703 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 190, 40 |
| Conread position: | 348-794 |
| Cow position: | chr29:251149-251611 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 312 |
| Conread position: | 363-592 |
| Cow position: | chr29:4057307-4057544 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 404-813 |
| Cow position: | chr29:32559324-32558895 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 457-760 |
| Cow position: | chr29:32803929-32804243 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 68, 159 |
| Conread position: | 513-753 |
| Cow position: | chr29:2949786-2949538 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 516-813 |
| Cow position: | chr29:8664078-8664374 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 530-813 |
| Cow position: | chr29:6265708-6265415 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 542-808 |
| Cow position: | chr29:16110960-16111232 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 551-760 |
| Cow position: | chr29:38655057-38654843 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 581-760 |
| Cow position: | chr29:16344863-16345044 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 583-813 |
| Cow position: | chr29:35815351-35815116 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 586-809 |
| Cow position: | chr29:14210939-14210713 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 125 |
| Conread position: | 587-813 |
| Cow position: | chr29:14216599-14216828 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 605-833 |
| Cow position: | chr29:15948878-15948650 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 611-813 |
| Cow position: | chr29:23976776-23976983 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 619-813 |
| Cow position: | chr29:2748590-2748393 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 640-808 |
| Cow position: | chr29:32540778-32540949 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.