Cow genome map
| Conread name: | Utr1-UTR010022D12 |
| Conread position: | 91-241 |
| Cow position: | chr4:54190325-54190476 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 96-303 |
| Cow position: | chr4:10408249-10408469 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 96-303 |
| Cow position: | chr4:66925473-66925689 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 104-303 |
| Cow position: | chr4:46663680-46663881 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 252-490 |
| Cow position: | chr4:1496391-1496140 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 252-492 |
| Cow position: | chr4:12587300-12587550 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-492 |
| Cow position: | chr4:12607657-12607421 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 59 |
| Conread position: | 252-539 |
| Cow position: | chr4:33493826-33494123 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-602 |
| Cow position: | chr4:41120305-41120689 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 252-636 |
| Cow position: | chr4:45049297-45048891 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 252-648 |
| Cow position: | chr4:44725085-44725504 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-720 |
| Cow position: | chr4:39271392-39270900 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 252-802 |
| Cow position: | chr4:60264158-60263591 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 252-813 |
| Cow position: | chr4:6490363-6489782 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr4:12241216-12240629 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr4:18516898-18517480 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 252-813 |
| Cow position: | chr4:25599501-25598915 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 252-813 |
| Cow position: | chr4:31669273-31669857 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr4:43319645-43319061 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr4:43881110-43881687 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-813 |
| Cow position: | chr4:46664514-46665099 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 529 |
| Conread position: | 252-813 |
| Cow position: | chr4:61694500-61693958 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 15 |
| Conread position: | 254-459 |
| Cow position: | chr4:65223538-65223322 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 254-612 |
| Cow position: | chr4:14821544-14821176 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 254-628 |
| Cow position: | chr4:17926251-17925855 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 254-723 |
| Cow position: | chr4:26886857-26886365 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 254-802 |
| Cow position: | chr4:13870019-13870588 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 379 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 22, 198 |
| Conread position: | 254-813 |
| Cow position: | chr4:16326778-16326193 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 254-813 |
| Cow position: | chr4:34184518-34183959 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 190 |
| Conread position: | 254-813 |
| Cow position: | chr4:36896371-36896954 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 255-760 |
| Cow position: | chr4:355913-356436 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-813 |
| Cow position: | chr4:31565300-31564724 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 255-813 |
| Cow position: | chr4:48026400-48026984 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 256-718 |
| Cow position: | chr4:11837638-11837162 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 256-813 |
| Cow position: | chr4:18190403-18190976 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 347 |
| Conread position: | 256-813 |
| Cow position: | chr4:18424527-18423944 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 364 |
| Conread position: | 256-815 |
| Cow position: | chr4:3125793-3126375 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 349 |
| Conread position: | 257-695 |
| Cow position: | chr4:16359888-16360334 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 264-590 |
| Cow position: | chr4:28831354-28831687 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 210 |
| Conread position: | 266-631 |
| Cow position: | chr4:11111403-11111024 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 267-813 |
| Cow position: | chr4:5880174-5880743 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 507 |
| Conread position: | 278-778 |
| Cow position: | chr4:51043216-51042710 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 20 |
| Conread position: | 279-813 |
| Cow position: | chr4:15194637-15195183 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 288-531 |
| Cow position: | chr4:21256384-21256640 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 175 |
| Conread position: | 288-808 |
| Cow position: | chr4:60112333-60111807 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 305-573 |
| Cow position: | chr4:43454730-43455004 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 310-455 |
| Cow position: | chr4:27333494-27333642 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-611 |
| Cow position: | chr4:6268572-6268256 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 50, 309 |
| Conread position: | 310-649 |
| Cow position: | chr4:4176857-4177204 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 310-649 |
| Cow position: | chr4:27295452-27295092 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 95 |
| Conread position: | 310-713 |
| Cow position: | chr4:16056661-16057079 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 50 |
| Conread position: | 310-717 |
| Cow position: | chr4:13548089-13548512 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 82 |
| Conread position: | 310-760 |
| Cow position: | chr4:100874-100409 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 395 |
| Conread position: | 310-808 |
| Cow position: | chr4:13493375-13493895 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 310-808 |
| Cow position: | chr4:41954533-41955037 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 393 |
| Conread position: | 310-808 |
| Cow position: | chr4:41958188-41958702 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-813 |
| Cow position: | chr4:1930564-1930050 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 58 |
| Conread position: | 310-813 |
| Cow position: | chr4:4416141-4416652 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 93 |
| Conread position: | 310-813 |
| Cow position: | chr4:32212227-32212750 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 310-813 |
| Cow position: | chr4:33072761-33072239 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 311-554 |
| Cow position: | chr4:19093487-19093731 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 311-812 |
| Cow position: | chr4:38929487-38929992 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 129, 62 |
| Conread position: | 314-590 |
| Cow position: | chr4:9354712-9354425 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 314-665 |
| Cow position: | chr4:968585-968212 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 317-616 |
| Cow position: | chr4:38905821-38906126 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 319-813 |
| Cow position: | chr4:57984056-57984563 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 394 |
| Conread position: | 372-813 |
| Cow position: | chr4:29531752-29531299 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 115 |
| Conread position: | 376-758 |
| Cow position: | chr4:17587534-17587148 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 66, 132 |
| Conread position: | 377-817 |
| Cow position: | chr4:62568560-62569018 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 307 |
| Conread position: | 391-802 |
| Cow position: | chr4:529539-529969 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 315 |
| Conread position: | 391-813 |
| Cow position: | chr4:159296-159739 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 394-788 |
| Cow position: | chr4:54158781-54159180 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 435-813 |
| Cow position: | chr4:27301265-27300900 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 448-814 |
| Cow position: | chr4:1367947-1367585 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 464-801 |
| Cow position: | chr4:41332930-41333280 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 316 |
| Conread position: | 479-813 |
| Cow position: | chr4:603251-603596 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 487-805 |
| Cow position: | chr4:58689847-58689519 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 112 |
| Conread position: | 504-813 |
| Cow position: | chr4:12587594-12587914 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 199 |
| Conread position: | 511-813 |
| Cow position: | chr4:10881822-10882128 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 551-813 |
| Cow position: | chr4:17093552-17093285 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 559-813 |
| Cow position: | chr4:18337184-18337444 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 564-824 |
| Cow position: | chr4:17365605-17365342 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 223 |
| Conread position: | 579-813 |
| Cow position: | chr4:28831903-28832141 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 591-772 |
| Cow position: | chr4:17540114-17539932 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 49, 119 |
| Conread position: | 622-802 |
| Cow position: | chr4:14820981-14820800 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 102 |
Show alignments to all cow chromosomes.