Cow genome map
| Conread name: | Utr1-UTR010032B02 |
| Conread position: | 576-855 |
| Cow position: | chr1:73653477-73653762 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 589-887 |
| Cow position: | chr1:77118394-77118685 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 8 |
| Conread position: | 589-890 |
| Cow position: | chr1:8869500-8869812 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 193 |
| Conread position: | 637-890 |
| Cow position: | chr1:15691431-15691185 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 185, 103 |
| Conread position: | 641-890 |
| Cow position: | chr1:77132700-77132452 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 642-863 |
| Cow position: | chr1:44746954-44746742 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 642-880 |
| Cow position: | chr1:6734546-6734322 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 221, 56 |
| Conread position: | 642-889 |
| Cow position: | chr1:29916506-29916255 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 206 |
| Conread position: | 642-890 |
| Cow position: | chr1:13195339-13195573 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 218, 58 |
| Conread position: | 642-890 |
| Cow position: | chr1:23099995-23099747 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 642-890 |
| Cow position: | chr1:29975508-29975752 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 221, 190 |
| Conread position: | 642-890 |
| Cow position: | chr1:92642357-92642595 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 224, 98 |
| Conread position: | 643-813 |
| Cow position: | chr1:28678613-28678444 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 643-889 |
| Cow position: | chr1:76096529-76096290 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 643-890 |
| Cow position: | chr1:90413469-90413227 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 644-859 |
| Cow position: | chr1:50634171-50634381 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 182, 56 |
| Conread position: | 644-883 |
| Cow position: | chr1:29657910-29657682 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 222, 56 |
| Conread position: | 644-883 |
| Cow position: | chr1:64189590-64189354 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 222, 188 |
| Conread position: | 644-887 |
| Cow position: | chr1:89548278-89548040 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 644-889 |
| Cow position: | chr1:26688383-26688626 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 222, 31 |
| Conread position: | 644-889 |
| Cow position: | chr1:41735530-41735772 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 92, 191 |
| Conread position: | 644-889 |
| Cow position: | chr1:63314920-63314677 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 644-889 |
| Cow position: | chr1:71136242-71136001 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 215, 191 |
| Conread position: | 644-889 |
| Cow position: | chr1:74947028-74947274 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 170 |
| Conread position: | 644-889 |
| Cow position: | chr1:89443389-89443628 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 644-890 |
| Cow position: | chr1:22777454-22777702 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 186, 118 |
| Conread position: | 644-890 |
| Cow position: | chr1:35843837-35844080 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 114, 151 |
| Conread position: | 644-890 |
| Cow position: | chr1:45638573-45638335 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 222, 48 |
| Conread position: | 644-890 |
| Cow position: | chr1:50345635-50345394 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 222, 168 |
| Conread position: | 644-890 |
| Cow position: | chr1:57783094-57782857 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 644-890 |
| Cow position: | chr1:80764446-80764687 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 218, 115 |
| Conread position: | 644-890 |
| Cow position: | chr1:80973518-80973766 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 165, 56 |
| Conread position: | 644-890 |
| Cow position: | chr1:90422993-90423234 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 645-890 |
| Cow position: | chr1:30413680-30413439 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 645-890 |
| Cow position: | chr1:69415621-69415866 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 218, 200 |
| Conread position: | 646-883 |
| Cow position: | chr1:38692755-38692518 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 647-880 |
| Cow position: | chr1:50045887-50045657 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 219, 56 |
| Conread position: | 649-871 |
| Cow position: | chr1:2765498-2765278 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 649-889 |
| Cow position: | chr1:5278330-5278564 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 51 |
| Conread position: | 649-889 |
| Cow position: | chr1:8192649-8192881 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 170, 51 |
| Conread position: | 649-890 |
| Cow position: | chr1:6794841-6795082 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 165, 51 |
| Conread position: | 649-890 |
| Cow position: | chr1:58825626-58825396 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 649-890 |
| Cow position: | chr1:61737180-61736948 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 649-890 |
| Cow position: | chr1:66355630-66355865 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 220, 54 |
| Conread position: | 649-890 |
| Cow position: | chr1:69004478-69004244 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 217, 51 |
| Conread position: | 649-890 |
| Cow position: | chr1:75347709-75347468 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 213, 202 |
| Conread position: | 649-890 |
| Cow position: | chr1:101771984-101771756 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 650-887 |
| Cow position: | chr1:85411661-85411428 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 660-887 |
| Cow position: | chr1:20582017-20581799 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 206, 130 |
| Conread position: | 665-889 |
| Cow position: | chr1:46205879-46205666 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 201, 35 |
| Conread position: | 665-890 |
| Cow position: | chr1:62732641-62732425 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 151, 88 |
| Conread position: | 665-890 |
| Cow position: | chr1:99807646-99807876 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 190 |
| Conread position: | 666-862 |
| Cow position: | chr1:72732108-72731916 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 666-890 |
| Cow position: | chr1:21934106-21934328 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 189, 82 |
| Conread position: | 666-890 |
| Cow position: | chr1:78791237-78791456 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 667-890 |
| Cow position: | chr1:10719411-10719634 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 95 |
| Conread position: | 674-890 |
| Cow position: | chr1:81301032-81301247 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 145, 65 |
| Conread position: | 675-890 |
| Cow position: | chr1:31871483-31871272 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 186, 25 |
| Conread position: | 675-890 |
| Cow position: | chr1:57247493-57247287 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 48 |
| Conread position: | 678-890 |
| Cow position: | chr1:93110562-93110774 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 701-890 |
| Cow position: | chr1:7142814-7143001 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 165, 22 |
| Conread position: | 701-890 |
| Cow position: | chr1:49131077-49131270 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 703-886 |
| Cow position: | chr1:46839635-46839450 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 703-887 |
| Cow position: | chr1:85596013-85596200 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 144, 72 |
| Conread position: | 703-890 |
| Cow position: | chr1:765534-765721 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 703-890 |
| Cow position: | chr1:32244365-32244553 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 142 |
| Conread position: | 707-890 |
| Cow position: | chr1:5162018-5162202 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 709-875 |
| Cow position: | chr1:57263968-57264133 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 154, 103 |
| Conread position: | 713-890 |
| Cow position: | chr1:56643566-56643739 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 153, 132 |
| Conread position: | 722-890 |
| Cow position: | chr1:56408630-56408465 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 144, 20 |
| Conread position: | 723-890 |
| Cow position: | chr1:9443836-9443998 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 143, 13 |
| Conread position: | 723-890 |
| Cow position: | chr1:85783538-85783373 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 143, 83 |
| Conread position: | 724-890 |
| Cow position: | chr1:38525601-38525438 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 724-890 |
| Cow position: | chr1:101812265-101812431 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 740-870 |
| Cow position: | chr1:22387948-22388072 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 745-889 |
| Cow position: | chr1:64938949-64939091 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 754-890 |
| Cow position: | chr1:20422222-20422356 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 92 |
| Conread position: | 756-890 |
| Cow position: | chr1:50634420-50634554 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 89 |
| Conread position: | 759-890 |
| Cow position: | chr1:51836548-51836417 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 107, 86 |
Show alignments to all cow chromosomes.