Cow genome map
| Conread name: | Utr1-UTR010032B02 |
| Conread position: | 564-889 |
| Cow position: | chr3:63039270-63038954 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 594-889 |
| Cow position: | chr3:37452181-37451885 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 617-890 |
| Cow position: | chr3:20092438-20092695 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 637-890 |
| Cow position: | chr3:36100904-36100650 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 211, 66 |
| Conread position: | 637-890 |
| Cow position: | chr3:51146601-51146844 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 640-887 |
| Cow position: | chr3:50348027-50347787 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 226, 44 |
| Conread position: | 641-890 |
| Cow position: | chr3:31907078-31907323 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 641-890 |
| Cow position: | chr3:55778099-55777855 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 82 |
| Conread position: | 642-888 |
| Cow position: | chr3:23091914-23092159 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 222, 119 |
| Conread position: | 643-871 |
| Cow position: | chr3:31933039-31933266 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 167, 55 |
| Conread position: | 643-890 |
| Cow position: | chr3:18216708-18216944 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 643-890 |
| Cow position: | chr3:50462397-50462159 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 223, 57 |
| Conread position: | 644-794 |
| Cow position: | chr3:9074286-9074433 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 644-883 |
| Cow position: | chr3:62884263-62884031 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 218, 39 |
| Conread position: | 644-889 |
| Cow position: | chr3:15977241-15976987 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 644-889 |
| Cow position: | chr3:36174008-36174251 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 644-889 |
| Cow position: | chr3:44861252-44861485 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 219, 56 |
| Conread position: | 644-890 |
| Cow position: | chr3:8457714-8457477 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 217, 95 |
| Conread position: | 644-890 |
| Cow position: | chr3:12255538-12255296 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 644-890 |
| Cow position: | chr3:42563512-42563274 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 644-890 |
| Cow position: | chr3:53588324-53588569 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 222, 100 |
| Conread position: | 644-890 |
| Cow position: | chr3:54862358-54862601 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 195, 25 |
| Conread position: | 644-890 |
| Cow position: | chr3:55373509-55373753 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 644-890 |
| Cow position: | chr3:55991808-55992049 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 644-890 |
| Cow position: | chr3:61322900-61322666 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 644-890 |
| Cow position: | chr3:66708007-66708254 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 112, 202 |
| Conread position: | 645-889 |
| Cow position: | chr3:8924100-8923866 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 218, 55 |
| Conread position: | 645-889 |
| Cow position: | chr3:74699325-74699573 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 143, 8 |
| Conread position: | 645-890 |
| Cow position: | chr3:41718451-41718204 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 52 |
| Conread position: | 646-890 |
| Cow position: | chr3:74611621-74611383 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 220, 54 |
| Conread position: | 648-890 |
| Cow position: | chr3:54881822-54881575 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 649-789 |
| Cow position: | chr3:77981262-77981402 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 649-848 |
| Cow position: | chr3:20158451-20158261 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 649-888 |
| Cow position: | chr3:71135841-71135612 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 215, 44 |
| Conread position: | 649-889 |
| Cow position: | chr3:3736353-3736107 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 166, 202 |
| Conread position: | 649-889 |
| Cow position: | chr3:58174959-58174723 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 168, 50 |
| Conread position: | 649-890 |
| Cow position: | chr3:15655091-15655330 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 649-890 |
| Cow position: | chr3:33327764-33327522 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 203 |
| Conread position: | 660-889 |
| Cow position: | chr3:20471321-20471543 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 206, 90 |
| Conread position: | 660-890 |
| Cow position: | chr3:5419820-5420044 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 155, 40 |
| Conread position: | 661-890 |
| Cow position: | chr3:74205766-74205992 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 665-890 |
| Cow position: | chr3:79376306-79376080 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 178, 35 |
| Conread position: | 666-890 |
| Cow position: | chr3:37186864-37186651 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 149, 79 |
| Conread position: | 667-889 |
| Cow position: | chr3:77225155-77224939 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 670-890 |
| Cow position: | chr3:56637698-56637488 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 196, 84 |
| Conread position: | 674-890 |
| Cow position: | chr3:51255812-51255607 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 192, 18 |
| Conread position: | 675-837 |
| Cow position: | chr3:34675751-34675590 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 675-890 |
| Cow position: | chr3:68342220-68342436 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 112 |
| Conread position: | 676-889 |
| Cow position: | chr3:59608530-59608326 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 186, 99 |
| Conread position: | 684-889 |
| Cow position: | chr3:2198902-2198701 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 684-889 |
| Cow position: | chr3:18458639-18458837 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 178, 75 |
| Conread position: | 687-864 |
| Cow position: | chr3:48629573-48629748 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 703-878 |
| Cow position: | chr3:28478093-28477920 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 703-887 |
| Cow position: | chr3:22171191-22171007 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 163, 142 |
| Conread position: | 703-890 |
| Cow position: | chr3:8790594-8790773 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 159, 41 |
| Conread position: | 703-890 |
| Cow position: | chr3:14625390-14625571 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 703-890 |
| Cow position: | chr3:15051948-15052134 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 109 |
| Conread position: | 710-890 |
| Cow position: | chr3:47524513-47524689 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 721-890 |
| Cow position: | chr3:23945084-23944917 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 726-890 |
| Cow position: | chr3:34315977-34316142 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 730-890 |
| Cow position: | chr3:2810267-2810426 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 118 |
| Conread position: | 758-889 |
| Cow position: | chr3:33632943-33633069 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 108, 60 |
| Conread position: | 758-890 |
| Cow position: | chr3:66116162-66116294 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 86 |
| Conread position: | 760-889 |
| Cow position: | chr3:42603776-42603654 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 767-890 |
| Cow position: | chr3:16809845-16809969 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 78 |
Show alignments to all cow chromosomes.