Cow genome map
| Conread name: | Utr1-UTR010032B02 |
| Conread position: | 575-841 |
| Cow position: | chr6:59633344-59633063 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 641-889 |
| Cow position: | chr6:18582686-18582928 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 174, 51 |
| Conread position: | 642-870 |
| Cow position: | chr6:4164045-4164268 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 173, 58 |
| Conread position: | 642-890 |
| Cow position: | chr6:7173624-7173872 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 220, 203 |
| Conread position: | 644-888 |
| Cow position: | chr6:57118818-57119056 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 219, 105 |
| Conread position: | 644-890 |
| Cow position: | chr6:6943557-6943796 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 171, 40 |
| Conread position: | 644-890 |
| Cow position: | chr6:9026643-9026398 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 141, 56 |
| Conread position: | 644-890 |
| Cow position: | chr6:24223035-24223279 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 219, 48 |
| Conread position: | 644-890 |
| Cow position: | chr6:36194722-36194472 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 644-890 |
| Cow position: | chr6:47204599-47204356 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 169, 57 |
| Conread position: | 644-890 |
| Cow position: | chr6:54144426-54144186 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 222, 56 |
| Conread position: | 645-883 |
| Cow position: | chr6:47326949-47327178 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 645-887 |
| Cow position: | chr6:6367548-6367784 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 645-890 |
| Cow position: | chr6:35415393-35415641 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 216, 200 |
| Conread position: | 645-890 |
| Cow position: | chr6:37739300-37739067 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 645-890 |
| Cow position: | chr6:53673987-53673744 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 202 |
| Conread position: | 646-890 |
| Cow position: | chr6:55892889-55892647 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 201, 98 |
| Conread position: | 648-863 |
| Cow position: | chr6:59588287-59588497 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 44 |
| Conread position: | 649-874 |
| Cow position: | chr6:24545732-24545511 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 649-874 |
| Cow position: | chr6:61217911-61218133 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 151, 43 |
| Conread position: | 649-890 |
| Cow position: | chr6:16634108-16634337 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 217, 43 |
| Conread position: | 649-890 |
| Cow position: | chr6:19427569-19427334 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 212, 54 |
| Conread position: | 649-890 |
| Cow position: | chr6:24622855-24623092 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 210, 100 |
| Conread position: | 649-890 |
| Cow position: | chr6:51840397-51840151 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 162, 192 |
| Conread position: | 650-890 |
| Cow position: | chr6:50317927-50318175 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 651-888 |
| Cow position: | chr6:36652539-36652302 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 662-889 |
| Cow position: | chr6:18048919-18049148 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 87 |
| Conread position: | 665-890 |
| Cow position: | chr6:6731362-6731148 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 197, 41 |
| Conread position: | 665-890 |
| Cow position: | chr6:48572778-48572998 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 192, 167 |
| Conread position: | 665-890 |
| Cow position: | chr6:55475357-55475127 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 145, 94 |
| Conread position: | 665-890 |
| Cow position: | chr6:58074150-58073929 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 196, 44 |
| Conread position: | 666-890 |
| Cow position: | chr6:63197062-63197287 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 182, 84 |
| Conread position: | 670-890 |
| Cow position: | chr6:52556383-52556593 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 196, 82 |
| Conread position: | 675-889 |
| Cow position: | chr6:17534421-17534636 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 133, 100 |
| Conread position: | 677-863 |
| Cow position: | chr6:35774893-35775074 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 62, 77 |
| Conread position: | 680-886 |
| Cow position: | chr6:6994864-6995065 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 684-889 |
| Cow position: | chr6:56376265-56376470 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 182, 161 |
| Conread position: | 686-890 |
| Cow position: | chr6:33985060-33984848 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 126, 166 |
| Conread position: | 696-890 |
| Cow position: | chr6:54807297-54807108 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 170, 5 |
| Conread position: | 703-887 |
| Cow position: | chr6:7824830-7824648 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 160, 130 |
| Conread position: | 703-888 |
| Cow position: | chr6:58316113-58315929 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 703-889 |
| Cow position: | chr6:3545759-3545577 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 703-889 |
| Cow position: | chr6:8318096-8318282 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 703-889 |
| Cow position: | chr6:12387263-12387442 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 106, 46 |
| Conread position: | 703-889 |
| Cow position: | chr6:44371881-44372061 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 703-890 |
| Cow position: | chr6:22969147-22968962 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 163, 61 |
| Conread position: | 703-890 |
| Cow position: | chr6:38453706-38453901 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 136, 98 |
| Conread position: | 706-890 |
| Cow position: | chr6:48344393-48344213 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 158, 14 |
| Conread position: | 709-890 |
| Cow position: | chr6:30474381-30474208 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 53 |
| Conread position: | 713-890 |
| Cow position: | chr6:28164855-28164679 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 103, 54 |
| Conread position: | 714-888 |
| Cow position: | chr6:44511299-44511126 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 154, 50 |
| Conread position: | 714-890 |
| Cow position: | chr6:47624908-47625082 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 152, 47 |
| Conread position: | 729-889 |
| Cow position: | chr6:48806955-48807114 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 134, 29 |
| Conread position: | 735-889 |
| Cow position: | chr6:17669329-17669177 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 737-887 |
| Cow position: | chr6:60153068-60152920 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 21 |
Show alignments to all cow chromosomes.