Cow genome map
| Conread name: | Utr1-UTR010032B02 |
| Conread position: | 575-890 |
| Cow position: | chrX:38936883-38936568 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 141 |
| Conread position: | 579-890 |
| Cow position: | chrX:25418968-25419290 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 641-890 |
| Cow position: | chrX:7497356-7497111 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 174, 199 |
| Conread position: | 642-889 |
| Cow position: | chrX:40789319-40789077 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 220, 33 |
| Conread position: | 642-890 |
| Cow position: | chrX:20377083-20376833 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 173, 204 |
| Conread position: | 642-890 |
| Cow position: | chrX:24259466-24259714 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 644-840 |
| Cow position: | chrX:7345194-7345004 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 644-875 |
| Cow position: | chrX:32743644-32743417 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 644-877 |
| Cow position: | chrX:6563630-6563401 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 220, 56 |
| Conread position: | 644-889 |
| Cow position: | chrX:3154132-3154375 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 133, 153 |
| Conread position: | 644-889 |
| Cow position: | chrX:33802897-33803140 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 171, 56 |
| Conread position: | 644-889 |
| Cow position: | chrX:41560155-41560374 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 222, 51 |
| Conread position: | 644-890 |
| Cow position: | chrX:16514156-16514395 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 222, 56 |
| Conread position: | 644-890 |
| Cow position: | chrX:21664610-21664854 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 644-890 |
| Cow position: | chrX:25713906-25713665 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 137 |
| Conread position: | 644-890 |
| Cow position: | chrX:27287626-27287866 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 223, 56 |
| Conread position: | 644-890 |
| Cow position: | chrX:31340821-31340576 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 222, 131 |
| Conread position: | 645-890 |
| Cow position: | chrX:42011392-42011151 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 649-882 |
| Cow position: | chrX:18142348-18142579 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 167, 91 |
| Conread position: | 649-889 |
| Cow position: | chrX:9161681-9161454 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 649-889 |
| Cow position: | chrX:10302447-10302207 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 58, 163 |
| Conread position: | 649-890 |
| Cow position: | chrX:630204-630438 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 217, 104 |
| Conread position: | 649-890 |
| Cow position: | chrX:11562252-11562024 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 137, 47 |
| Conread position: | 649-890 |
| Cow position: | chrX:17964416-17964651 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 649-890 |
| Cow position: | chrX:18456507-18456264 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 649-890 |
| Cow position: | chrX:25193763-25193528 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 166, 43 |
| Conread position: | 649-890 |
| Cow position: | chrX:41071036-41070805 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 213, 15 |
| Conread position: | 650-889 |
| Cow position: | chrX:47744192-47743948 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 165, 48 |
| Conread position: | 658-890 |
| Cow position: | chrX:19930745-19930523 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 660-890 |
| Cow position: | chrX:25338282-25338051 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 155, 186 |
| Conread position: | 662-889 |
| Cow position: | chrX:38964200-38963975 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 96 |
| Conread position: | 662-889 |
| Cow position: | chrX:39415278-39415499 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 148, 88 |
| Conread position: | 664-890 |
| Cow position: | chrX:17542050-17541835 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 665-881 |
| Cow position: | chrX:6656472-6656263 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 197, 33 |
| Conread position: | 665-887 |
| Cow position: | chrX:26493544-26493766 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 201, 180 |
| Conread position: | 665-889 |
| Cow position: | chrX:32431713-32431496 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 665-890 |
| Cow position: | chrX:21566496-21566270 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 199, 180 |
| Conread position: | 666-890 |
| Cow position: | chrX:28111598-28111374 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 193, 188 |
| Conread position: | 669-889 |
| Cow position: | chrX:25388156-25388364 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 197, 31 |
| Conread position: | 669-889 |
| Cow position: | chrX:29032496-29032281 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 674-887 |
| Cow position: | chrX:6041129-6041341 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 190, 171 |
| Conread position: | 675-866 |
| Cow position: | chrX:27771497-27771685 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 161, 26 |
| Conread position: | 675-888 |
| Cow position: | chrX:17630724-17630933 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 677-890 |
| Cow position: | chrX:11746920-11746712 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 185, 38 |
| Conread position: | 678-890 |
| Cow position: | chrX:17042759-17042560 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 189, 51 |
| Conread position: | 680-890 |
| Cow position: | chrX:20791741-20791950 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 186, 132 |
| Conread position: | 684-890 |
| Cow position: | chrX:11313710-11313910 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 175, 128 |
| Conread position: | 703-862 |
| Cow position: | chrX:40643042-40642884 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 140 |
| Conread position: | 703-889 |
| Cow position: | chrX:25232644-25232460 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 161, 56 |
| Conread position: | 703-890 |
| Cow position: | chrX:8913974-8913791 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 703-890 |
| Cow position: | chrX:8915718-8915535 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 703-890 |
| Cow position: | chrX:18417539-18417721 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 163, 37 |
| Conread position: | 703-890 |
| Cow position: | chrX:46146510-46146693 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 711-890 |
| Cow position: | chrX:34994176-34994005 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 711-890 |
| Cow position: | chrX:38840927-38840758 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 714-890 |
| Cow position: | chrX:29056158-29055987 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 150, 44 |
| Conread position: | 723-890 |
| Cow position: | chrX:1978545-1978383 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 95 |
| Conread position: | 724-890 |
| Cow position: | chrX:17271251-17271417 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 725-890 |
| Cow position: | chrX:5046866-5047036 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 729-890 |
| Cow position: | chrX:8681899-8682060 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 116 |
| Conread position: | 730-890 |
| Cow position: | chrX:33826991-33827150 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 12 |
| Conread position: | 732-890 |
| Cow position: | chrX:488517-488359 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 135, 113 |
| Conread position: | 743-889 |
| Cow position: | chrX:31273260-31273113 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 761-890 |
| Cow position: | chrX:25967031-25966906 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 57 |
| Conread position: | 777-890 |
| Cow position: | chrX:30005246-30005136 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.