Cow genome map

Conread name: Utr1-UTR010044B01

Conread position: 1-225
Cow position: chr25:18268453-18268212 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 102, 0

Conread position: 1-255
Cow position: chr25:34344204-34343940 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 102, 0

Conread position: 1-404
Cow position: chr25:18179524-18179930 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 241

Conread position: 1-407
Cow position: chr25:24449731-24449328 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 39

Conread position: 1-414
Cow position: chr25:22150576-22150995 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 1-419
Cow position: chr25:33990745-33990325 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 213

Conread position: 1-423
Cow position: chr25:17554968-17554541 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 31

Conread position: 1-505
Cow position: chr25:27534204-27533697 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 112

Conread position: 1-547
Cow position: chr25:24007408-24007960 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-611
Cow position: chr25:21949298-21949920 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 253

Conread position: 1-715
Cow position: chr25:20633267-20633988 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 243

Conread position: 1-735
Cow position: chr25:32578157-32577414 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 91

Conread position: 1-769
Cow position: chr25:34503729-34502936 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 611
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 227

Conread position: 1-833
Cow position: chr25:17586520-17585671 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 644
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 1-838
Cow position: chr25:18886967-18886126 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 668
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 242

Conread position: 1-839
Cow position: chr25:11930042-11929204 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 251

Conread position: 1-839
Cow position: chr25:35755743-35754886 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 658
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 234

Conread position: 1-849
Cow position: chr25:28862371-28863238 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 675
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 240

Conread position: 1-849
Cow position: chr25:35568381-35567521 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 13

Conread position: 1-850
Cow position: chr25:2594278-2595136 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 150

Conread position: 1-850
Cow position: chr25:13959571-13960429 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 686
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 234

Conread position: 1-850
Cow position: chr25:18489553-18490441 (view UCSC Genome Browser custom track)
Alignm length: 896
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 13

Conread position: 1-850
Cow position: chr25:19337817-19336957 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 169

Conread position: 1-850
Cow position: chr25:25481107-25480251 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 647
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 124

Conread position: 1-850
Cow position: chr25:26281524-26282394 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 680
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 242

Conread position: 1-850
Cow position: chr25:29526361-29525497 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr25:35553192-35554038 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 651
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 54

Conread position: 1-850
Cow position: chr25:40390209-40389367 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 18

Conread position: 1-850
Cow position: chr25:41098695-41097828 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 640
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 240

Conread position: 1-850
Cow position: chr25:41120509-41121371 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 143

Conread position: 2-791
Cow position: chr25:392776-393568 (view UCSC Genome Browser custom track)
Alignm length: 817
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 123

Conread position: 2-850
Cow position: chr25:33688718-33687836 (view UCSC Genome Browser custom track)
Alignm length: 889
Alignm identity: 650
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 301

Conread position: 5-269
Cow position: chr25:18159279-18159009 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 20, 157

Conread position: 5-414
Cow position: chr25:16923633-16923223 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 205

Conread position: 5-446
Cow position: chr25:39387140-39387586 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 239

Conread position: 5-473
Cow position: chr25:25109522-25109032 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 156

Conread position: 5-700
Cow position: chr25:22431261-22431962 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 12

Conread position: 5-848
Cow position: chr25:12939703-12938839 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 239

Conread position: 5-850
Cow position: chr25:11665177-11666032 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 652
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 20

Conread position: 5-850
Cow position: chr25:35626713-35625852 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 35

Conread position: 6-721
Cow position: chr25:450263-449572 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 175

Conread position: 7-841
Cow position: chr25:27019731-27018878 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 232

Conread position: 7-850
Cow position: chr25:9394933-9395781 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 87

Conread position: 7-850
Cow position: chr25:11043129-11043985 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 232

Conread position: 7-850
Cow position: chr25:20772824-20771967 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 163

Conread position: 7-850
Cow position: chr25:26781576-26780716 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 652
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 232

Conread position: 7-850
Cow position: chr25:29803242-29802375 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 235

Conread position: 23-473
Cow position: chr25:22197864-22197408 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 125

Conread position: 23-850
Cow position: chr25:18128760-18129571 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 590
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 101

Conread position: 26-850
Cow position: chr25:18190850-18190009 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 637
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 218

Conread position: 34-409
Cow position: chr25:35561965-35561586 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 129

Conread position: 42-850
Cow position: chr25:41136192-41135381 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 632
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 202

Conread position: 45-511
Cow position: chr25:3374095-3373622 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 55-850
Cow position: chr25:34509624-34508812 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 94

Conread position: 59-319
Cow position: chr25:12835019-12834758 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 41, 66

Conread position: 60-849
Cow position: chr25:17657184-17657981 (view UCSC Genome Browser custom track)
Alignm length: 809
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 174

Conread position: 95-765
Cow position: chr25:17561632-17562321 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 149

Conread position: 102-764
Cow position: chr25:33575120-33574460 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 133

Conread position: 103-800
Cow position: chr25:7223825-7223115 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 137

Conread position: 111-850
Cow position: chr25:24655552-24654805 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 46

Conread position: 113-446
Cow position: chr25:34368749-34369082 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 174

Conread position: 114-735
Cow position: chr25:23999563-23998942 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 118

Conread position: 121-664
Cow position: chr25:28421073-28420527 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 78

Conread position: 121-850
Cow position: chr25:20495196-20495906 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 106

Conread position: 122-681
Cow position: chr25:10634377-10633816 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 35

Conread position: 124-848
Cow position: chr25:23462009-23462733 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 75

Conread position: 132-635
Cow position: chr25:35571455-35571965 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 103

Conread position: 132-850
Cow position: chr25:18071873-18072589 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 136-850
Cow position: chr25:34673933-34673218 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 104

Conread position: 148-850
Cow position: chr25:36350391-36351108 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 83

Conread position: 158-818
Cow position: chr25:10136485-10137151 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 77

Conread position: 180-328
Cow position: chr25:29134409-29134266 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 181-473
Cow position: chr25:34257418-34257128 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 55

Conread position: 181-475
Cow position: chr25:10704144-10704437 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 50

Conread position: 183-850
Cow position: chr25:26913927-26914607 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 44

Conread position: 197-728
Cow position: chr25:26930799-26931337 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 39

Conread position: 212-504
Cow position: chr25:8875820-8875530 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 24

Conread position: 227-850
Cow position: chr25:18473940-18474561 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 55

Conread position: 233-607
Cow position: chr25:9958314-9957942 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 50

Conread position: 234-849
Cow position: chr25:26895809-26896414 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 49

Conread position: 235-850
Cow position: chr25:25509612-25510259 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 47

Conread position: 236-646
Cow position: chr25:11896358-11896774 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 42

Conread position: 236-850
Cow position: chr25:23326286-23325659 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 47

Conread position: 241-472
Cow position: chr25:24228741-24228502 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 95, 42

Conread position: 241-772
Cow position: chr25:23361225-23361772 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 52

Conread position: 243-850
Cow position: chr25:26706135-26705512 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 39

Conread position: 256-497
Cow position: chr25:27536252-27536016 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 80, 37

Conread position: 289-468
Cow position: chr25:20073455-20073639 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 59

Conread position: 302-850
Cow position: chr25:13786780-13787334 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 53

Conread position: 311-850
Cow position: chr25:23393687-23394232 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 60

Show alignments to all cow chromosomes.