Cow genome map

Conread name: Utr1-UTR010044B01

Conread position: 1-225
Cow position: chr26:1884069-1883837 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 0

Conread position: 1-260
Cow position: chr26:4601435-4601173 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 73

Conread position: 1-278
Cow position: chr26:18781783-18781501 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 234

Conread position: 1-281
Cow position: chr26:30785531-30785816 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-328
Cow position: chr26:367388-367719 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 234

Conread position: 1-371
Cow position: chr26:3027861-3027486 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-391
Cow position: chr26:6844757-6844360 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 242

Conread position: 1-391
Cow position: chr26:19348738-19348348 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 237

Conread position: 1-409
Cow position: chr26:34271827-34272240 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-410
Cow position: chr26:21823875-21823462 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 112

Conread position: 1-418
Cow position: chr26:8087826-8088244 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-423
Cow position: chr26:1638279-1637853 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 68

Conread position: 1-428
Cow position: chr26:4122424-4122856 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-443
Cow position: chr26:23590414-23590859 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 237

Conread position: 1-530
Cow position: chr26:11289913-11290436 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 229

Conread position: 1-584
Cow position: chr26:2349415-2348826 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-584
Cow position: chr26:14896758-14897346 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 144

Conread position: 1-584
Cow position: chr26:21535118-21535708 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 243

Conread position: 1-607
Cow position: chr26:6320867-6321479 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 146

Conread position: 1-694
Cow position: chr26:12668208-12668895 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 246

Conread position: 1-699
Cow position: chr26:4548366-4549077 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 68

Conread position: 1-750
Cow position: chr26:9841649-9840870 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 155

Conread position: 1-752
Cow position: chr26:3699728-3700480 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 241

Conread position: 1-841
Cow position: chr26:17394135-17393283 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 653
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 237

Conread position: 1-843
Cow position: chr26:4729567-4728708 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 234

Conread position: 1-846
Cow position: chr26:33950610-33949754 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 53

Conread position: 1-848
Cow position: chr26:21011897-21012735 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 22

Conread position: 1-849
Cow position: chr26:35122486-35121618 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 1-850
Cow position: chr26:1087948-1088803 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 642
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 191

Conread position: 1-850
Cow position: chr26:1347226-1346368 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 652
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 165

Conread position: 1-850
Cow position: chr26:5679287-5680165 (view UCSC Genome Browser custom track)
Alignm length: 886
Alignm identity: 674
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 121

Conread position: 1-850
Cow position: chr26:8872602-8873471 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 213

Conread position: 1-850
Cow position: chr26:9114793-9115664 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr26:9559121-9558244 (view UCSC Genome Browser custom track)
Alignm length: 886
Alignm identity: 662
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 147

Conread position: 1-850
Cow position: chr26:13807270-13806403 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 662
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr26:14488497-14487638 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 675
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 243

Conread position: 1-850
Cow position: chr26:17326918-17327794 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 645
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 243

Conread position: 1-850
Cow position: chr26:18804607-18803743 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 234

Conread position: 1-850
Cow position: chr26:18856877-18857740 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 660
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 214

Conread position: 1-850
Cow position: chr26:23889168-23890029 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 80

Conread position: 1-850
Cow position: chr26:27987838-27986980 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 649
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 222

Conread position: 1-850
Cow position: chr26:28707303-28706437 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 239

Conread position: 1-850
Cow position: chr26:34264720-34265590 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 674
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 2-595
Cow position: chr26:4752808-4753402 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 244

Conread position: 2-850
Cow position: chr26:35423257-35424123 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 675
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 148

Conread position: 4-542
Cow position: chr26:8654566-8654035 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 137

Conread position: 7-444
Cow position: chr26:2671012-2670570 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 237

Conread position: 7-849
Cow position: chr26:2201296-2202153 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 232

Conread position: 7-850
Cow position: chr26:1389750-1390608 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 33

Conread position: 7-850
Cow position: chr26:12585774-12584912 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 33

Conread position: 7-850
Cow position: chr26:30586584-30585734 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 634
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 232

Conread position: 12-442
Cow position: chr26:3705410-3705844 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 141

Conread position: 23-850
Cow position: chr26:17429697-17428849 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 221

Conread position: 24-850
Cow position: chr26:3230248-3231092 (view UCSC Genome Browser custom track)
Alignm length: 851
Alignm identity: 636
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 132

Conread position: 34-319
Cow position: chr26:27940925-27941214 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 201

Conread position: 36-843
Cow position: chr26:3754833-3755616 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 85

Conread position: 46-607
Cow position: chr26:18934588-18934017 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 145

Conread position: 49-850
Cow position: chr26:26285667-26286485 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 627
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 190

Conread position: 55-287
Cow position: chr26:25189555-25189792 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 44, 75

Conread position: 55-626
Cow position: chr26:35520591-35520006 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 77

Conread position: 71-850
Cow position: chr26:10699665-10698890 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 166

Conread position: 75-841
Cow position: chr26:1620484-1621264 (view UCSC Genome Browser custom track)
Alignm length: 790
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 82-850
Cow position: chr26:20496373-20497166 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 116

Conread position: 95-836
Cow position: chr26:4324839-4324108 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 64

Conread position: 103-850
Cow position: chr26:13183173-13183936 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 137

Conread position: 116-424
Cow position: chr26:6425905-6426218 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 126

Conread position: 117-850
Cow position: chr26:34014709-34015464 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 124

Conread position: 125-492
Cow position: chr26:31793613-31793979 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 45

Conread position: 125-850
Cow position: chr26:35191663-35190922 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 115

Conread position: 148-843
Cow position: chr26:30594722-30594011 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 87

Conread position: 164-523
Cow position: chr26:12258856-12258498 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 76

Conread position: 181-357
Cow position: chr26:3565134-3564961 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 52

Conread position: 181-850
Cow position: chr26:4440809-4440145 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 53

Conread position: 183-850
Cow position: chr26:31138990-31138328 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 88

Conread position: 190-350
Cow position: chr26:386652-386809 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 146, 46

Conread position: 194-850
Cow position: chr26:21350466-21351096 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 40

Conread position: 195-838
Cow position: chr26:15891936-15892595 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 196-847
Cow position: chr26:19564378-19563723 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 26

Conread position: 212-461
Cow position: chr26:18773289-18773042 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 24

Conread position: 236-442
Cow position: chr26:3199552-3199346 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 46

Conread position: 236-716
Cow position: chr26:3537118-3537607 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 46

Conread position: 236-736
Cow position: chr26:20186305-20186806 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 47

Conread position: 236-843
Cow position: chr26:22660280-22659665 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 46

Conread position: 236-850
Cow position: chr26:8809876-8810481 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 46

Conread position: 236-850
Cow position: chr26:35561065-35560437 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 46

Conread position: 240-584
Cow position: chr26:7506713-7506368 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 42

Conread position: 241-850
Cow position: chr26:1885007-1885643 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 41

Conread position: 241-850
Cow position: chr26:8083827-8084452 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 41

Conread position: 243-850
Cow position: chr26:22691393-22692011 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 39

Conread position: 245-850
Cow position: chr26:9100974-9100366 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 39

Conread position: 261-514
Cow position: chr26:4600114-4599854 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 72, 22

Conread position: 269-850
Cow position: chr26:1343264-1342669 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 23

Show alignments to all cow chromosomes.