Cow genome map

Conread name: Utr1-UTR010044B01

Conread position: 1-222
Cow position: chr27:11488723-11488947 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 98, 168

Conread position: 1-300
Cow position: chr27:15034381-15034080 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 83

Conread position: 1-310
Cow position: chr27:773486-773799 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-315
Cow position: chr27:18697052-18697370 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 241

Conread position: 1-336
Cow position: chr27:26599640-26599963 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 159

Conread position: 1-341
Cow position: chr27:9332458-9332803 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 240

Conread position: 1-431
Cow position: chr27:13900608-13901040 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 22

Conread position: 1-431
Cow position: chr27:22648195-22647760 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-433
Cow position: chr27:10378898-10379334 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 234

Conread position: 1-439
Cow position: chr27:30035523-30035974 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 232

Conread position: 1-584
Cow position: chr27:12749744-12750325 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 1-609
Cow position: chr27:15543726-15544346 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-610
Cow position: chr27:27665712-27666341 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 1-636
Cow position: chr27:9990497-9989844 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 176

Conread position: 1-787
Cow position: chr27:1535895-1536685 (view UCSC Genome Browser custom track)
Alignm length: 810
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 160

Conread position: 1-812
Cow position: chr27:27193646-27192807 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 124

Conread position: 1-842
Cow position: chr27:8426573-8427431 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 159

Conread position: 1-845
Cow position: chr27:22742695-22741854 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 71

Conread position: 1-849
Cow position: chr27:15634621-15633763 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 661
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 133

Conread position: 1-850
Cow position: chr27:1520391-1521255 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr27:3232820-3231957 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 651
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 240

Conread position: 1-850
Cow position: chr27:4982083-4982941 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 233

Conread position: 1-850
Cow position: chr27:5913652-5914518 (view UCSC Genome Browser custom track)
Alignm length: 886
Alignm identity: 645
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 130

Conread position: 1-850
Cow position: chr27:5924971-5925843 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 251

Conread position: 1-850
Cow position: chr27:5984320-5983450 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 660
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 235

Conread position: 1-850
Cow position: chr27:8960318-8959436 (view UCSC Genome Browser custom track)
Alignm length: 888
Alignm identity: 677
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr27:13353008-13353886 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 669
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr27:14296927-14297786 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 661
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 245

Conread position: 1-850
Cow position: chr27:16031686-16030816 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 670
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 237

Conread position: 1-850
Cow position: chr27:19524001-19523129 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 668
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 242

Conread position: 1-850
Cow position: chr27:20810125-20810997 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 684
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 245

Conread position: 1-850
Cow position: chr27:21451154-21452027 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 662
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 18

Conread position: 1-850
Cow position: chr27:26855774-26856621 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 653
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 138

Conread position: 1-850
Cow position: chr27:27291106-27291974 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 80

Conread position: 1-850
Cow position: chr27:27729761-27728905 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 651
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 53

Conread position: 2-261
Cow position: chr27:3991719-3991981 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 62

Conread position: 2-850
Cow position: chr27:15273361-15272493 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 253

Conread position: 5-358
Cow position: chr27:22723073-22723428 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 196

Conread position: 5-433
Cow position: chr27:16788742-16788284 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 309

Conread position: 5-526
Cow position: chr27:30571548-30572063 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 170

Conread position: 5-730
Cow position: chr27:17567816-17568549 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 33

Conread position: 5-850
Cow position: chr27:15405365-15406200 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 617
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 76

Conread position: 6-850
Cow position: chr27:8972163-8973023 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 188

Conread position: 6-850
Cow position: chr27:25801489-25800630 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 233

Conread position: 7-451
Cow position: chr27:12146926-12146477 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 237

Conread position: 7-850
Cow position: chr27:166204-165339 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 659
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 219

Conread position: 7-850
Cow position: chr27:29036653-29035801 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 233

Conread position: 10-721
Cow position: chr27:23318203-23317507 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 168

Conread position: 12-254
Cow position: chr27:24260972-24260714 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 65, 0

Conread position: 12-848
Cow position: chr27:31267951-31268793 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 609
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 149

Conread position: 23-850
Cow position: chr27:1082430-1081595 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 628
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 209

Conread position: 28-850
Cow position: chr27:4332002-4331158 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 649
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 209

Conread position: 38-793
Cow position: chr27:25799006-25799774 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 174

Conread position: 39-720
Cow position: chr27:27044932-27045618 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 197

Conread position: 65-850
Cow position: chr27:2000618-2001425 (view UCSC Genome Browser custom track)
Alignm length: 814
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 176

Conread position: 68-850
Cow position: chr27:24296486-24295679 (view UCSC Genome Browser custom track)
Alignm length: 814
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 168

Conread position: 72-850
Cow position: chr27:10578728-10579524 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 167

Conread position: 74-538
Cow position: chr27:3759657-3760126 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 142

Conread position: 95-524
Cow position: chr27:27235297-27234864 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 146

Conread position: 100-685
Cow position: chr27:25971786-25971192 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 72

Conread position: 102-322
Cow position: chr27:22329030-22329250 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 81, 132

Conread position: 103-850
Cow position: chr27:29447259-29446524 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 132

Conread position: 104-850
Cow position: chr27:26784640-26785393 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 131

Conread position: 109-296
Cow position: chr27:20716718-20716904 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 16

Conread position: 109-850
Cow position: chr27:29811159-29811882 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 34

Conread position: 110-295
Cow position: chr27:8261675-8261858 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 74, 46

Conread position: 121-850
Cow position: chr27:26329768-26330513 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 109

Conread position: 127-802
Cow position: chr27:31249090-31249761 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 32

Conread position: 131-428
Cow position: chr27:7911829-7912123 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 50, 5

Conread position: 131-850
Cow position: chr27:27556653-27557379 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 102

Conread position: 181-547
Cow position: chr27:27849169-27849533 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 55

Conread position: 181-848
Cow position: chr27:1188554-1189235 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 109

Conread position: 182-697
Cow position: chr27:13308544-13309064 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 54

Conread position: 182-846
Cow position: chr27:21284329-21283670 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 38

Conread position: 187-477
Cow position: chr27:21342434-21342721 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 44

Conread position: 197-850
Cow position: chr27:11434091-11434743 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 36

Conread position: 199-437
Cow position: chr27:15926002-15925767 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 35

Conread position: 206-850
Cow position: chr27:22797732-22797078 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 9

Conread position: 207-850
Cow position: chr27:8200863-8201517 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 34

Conread position: 230-842
Cow position: chr27:3994360-3993766 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 52

Conread position: 235-458
Cow position: chr27:219851-219637 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 98, 47

Conread position: 236-512
Cow position: chr27:526147-525871 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 46

Conread position: 236-579
Cow position: chr27:4768386-4768730 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 46

Conread position: 262-850
Cow position: chr27:11480908-11481512 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 266-424
Cow position: chr27:2681302-2681459 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 67, 17

Conread position: 269-764
Cow position: chr27:14380305-14380795 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 14

Conread position: 275-847
Cow position: chr27:12281688-12282262 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 8

Show alignments to all cow chromosomes.