Cow genome map
| Conread name: | Utr1-UTR010044B01 | 
| Conread position: | 1-225 | 
| Cow position: | chr3:13036332-13036564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 1-225 | 
| Cow position: | chr3:19214991-19215227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 1-225 | 
| Cow position: | chr3:19718893-19718668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 114, 91 | 
| Conread position: | 1-260 | 
| Cow position: | chr3:48525383-48525647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 238 | 
| Conread position: | 1-264 | 
| Cow position: | chr3:50204187-50204456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 99, 239 | 
| Conread position: | 1-274 | 
| Cow position: | chr3:34028297-34028017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 158 | 
| Conread position: | 1-274 | 
| Cow position: | chr3:39855873-39856150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 36 | 
| Conread position: | 1-280 | 
| Cow position: | chr3:31396040-31396322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 234 | 
| Conread position: | 1-288 | 
| Cow position: | chr3:33470258-33469967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 81, 54 | 
| Conread position: | 1-293 | 
| Cow position: | chr3:4162321-4162013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 254 | 
| Conread position: | 1-293 | 
| Cow position: | chr3:35619228-35619523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 238 | 
| Conread position: | 1-293 | 
| Cow position: | chr3:36516999-36516704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 102, 80 | 
| Conread position: | 1-294 | 
| Cow position: | chr3:82888647-82888936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 98, 132 | 
| Conread position: | 1-310 | 
| Cow position: | chr3:36120526-36120839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-311 | 
| Cow position: | chr3:12666883-12667194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 125 | 
| Conread position: | 1-322 | 
| Cow position: | chr3:49453641-49453961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 39 | 
| Conread position: | 1-328 | 
| Cow position: | chr3:59864197-59864527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 238 | 
| Conread position: | 1-349 | 
| Cow position: | chr3:34458224-34457871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-353 | 
| Cow position: | chr3:14862847-14863218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 56 | 
| Conread position: | 1-359 | 
| Cow position: | chr3:2868118-2867756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-373 | 
| Cow position: | chr3:20889001-20888635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 36, 79 | 
| Conread position: | 1-391 | 
| Cow position: | chr3:55894469-55894861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 98, 17 | 
| Conread position: | 1-397 | 
| Cow position: | chr3:5886141-5886542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 243 | 
| Conread position: | 1-403 | 
| Cow position: | chr3:34347438-34347031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-404 | 
| Cow position: | chr3:27921090-27921501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 65 | 
| Conread position: | 1-409 | 
| Cow position: | chr3:36594468-36594878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 160 | 
| Conread position: | 1-414 | 
| Cow position: | chr3:41082805-41083223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 237 | 
| Conread position: | 1-423 | 
| Cow position: | chr3:34014984-34015411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-431 | 
| Cow position: | chr3:12664575-12665010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-440 | 
| Cow position: | chr3:15987628-15988073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-460 | 
| Cow position: | chr3:79592784-79593251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 241 | 
| Conread position: | 1-464 | 
| Cow position: | chr3:32413047-32412578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-473 | 
| Cow position: | chr3:41207954-41207477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 34 | 
| Conread position: | 1-504 | 
| Cow position: | chr3:42748081-42747571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 244 | 
| Conread position: | 1-514 | 
| Cow position: | chr3:5497794-5497279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 241 | 
| Conread position: | 1-517 | 
| Cow position: | chr3:6875629-6875117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 80 | 
| Conread position: | 1-560 | 
| Cow position: | chr3:65177652-65178216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 569 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 235 | 
| Conread position: | 1-588 | 
| Cow position: | chr3:32620399-32619811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-588 | 
| Cow position: | chr3:32837991-32838587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 606 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 296 | 
| Conread position: | 1-602 | 
| Cow position: | chr3:2920889-2921512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 74 | 
| Conread position: | 1-603 | 
| Cow position: | chr3:3060499-3061102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 154 | 
| Conread position: | 1-619 | 
| Cow position: | chr3:6713651-6714280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 205 | 
| Conread position: | 1-648 | 
| Cow position: | chr3:22338550-22339208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-648 | 
| Cow position: | chr3:40285674-40285017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 238 | 
| Conread position: | 1-648 | 
| Cow position: | chr3:57554411-57555070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 235 | 
| Conread position: | 1-648 | 
| Cow position: | chr3:63000719-63000080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 663 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 246 | 
| Conread position: | 1-673 | 
| Cow position: | chr3:56337312-56336651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 684 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 238 | 
| Conread position: | 1-674 | 
| Cow position: | chr3:31121502-31120809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 698 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 238 | 
| Conread position: | 1-681 | 
| Cow position: | chr3:21004456-21005151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 705 | 
| Alignm identity: | 526 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 238 | 
| Conread position: | 1-688 | 
| Cow position: | chr3:1033504-1034205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 706 | 
| Alignm identity: | 527 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-718 | 
| Cow position: | chr3:74848506-74847808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 728 | 
| Alignm identity: | 500 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 88 | 
| Conread position: | 1-719 | 
| Cow position: | chr3:62882005-62882726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 729 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 134 | 
| Conread position: | 1-735 | 
| Cow position: | chr3:29574478-29573738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 755 | 
| Alignm identity: | 563 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 1-736 | 
| Cow position: | chr3:27246045-27245303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 754 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 134 | 
| Conread position: | 1-749 | 
| Cow position: | chr3:26751529-26750808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 759 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 160 | 
| Conread position: | 1-751 | 
| Cow position: | chr3:63148996-63148235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 775 | 
| Alignm identity: | 539 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 15 | 
| Conread position: | 1-768 | 
| Cow position: | chr3:56719684-56718909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 135 | 
| Conread position: | 1-776 | 
| Cow position: | chr3:77726145-77726872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 538 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 332, 97 | 
| Conread position: | 1-784 | 
| Cow position: | chr3:34087549-34086761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 807 | 
| Alignm identity: | 542 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 50 | 
| Conread position: | 1-788 | 
| Cow position: | chr3:21026762-21025964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 819 | 
| Alignm identity: | 529 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 85 | 
| Conread position: | 1-800 | 
| Cow position: | chr3:23287693-23286878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 822 | 
| Alignm identity: | 622 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 238 | 
| Conread position: | 1-800 | 
| Cow position: | chr3:46858641-46857825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 822 | 
| Alignm identity: | 621 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-800 | 
| Cow position: | chr3:54087711-54086927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 818 | 
| Alignm identity: | 566 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 110 | 
| Conread position: | 1-829 | 
| Cow position: | chr3:25689295-25690136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 853 | 
| Alignm identity: | 643 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 240 | 
| Conread position: | 1-837 | 
| Cow position: | chr3:42994241-42993381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 14 | 
| Conread position: | 1-837 | 
| Cow position: | chr3:50920677-50921535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 639 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 65 | 
| Conread position: | 1-838 | 
| Cow position: | chr3:52689407-52690236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 857 | 
| Alignm identity: | 576 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 38 | 
| Conread position: | 1-840 | 
| Cow position: | chr3:18814149-18815007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 864 | 
| Alignm identity: | 676 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 39 | 
| Conread position: | 1-840 | 
| Cow position: | chr3:23205030-23204176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 866 | 
| Alignm identity: | 658 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 31 | 
| Conread position: | 1-842 | 
| Cow position: | chr3:32220383-32221212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 855 | 
| Alignm identity: | 617 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 55 | 
| Conread position: | 1-846 | 
| Cow position: | chr3:31418174-31419034 (view UCSC Genome Browser custom track) | 
| Alignm length: | 879 | 
| Alignm identity: | 657 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 159 | 
| Conread position: | 1-846 | 
| Cow position: | chr3:78024788-78023932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 871 | 
| Alignm identity: | 666 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 241 | 
| Conread position: | 1-847 | 
| Cow position: | chr3:83290294-83289438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 588 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 66 | 
| Conread position: | 1-848 | 
| Cow position: | chr3:14452300-14453162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 873 | 
| Alignm identity: | 627 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 244 | 
| Conread position: | 1-848 | 
| Cow position: | chr3:15656645-15655807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 608 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 242 | 
| Conread position: | 1-848 | 
| Cow position: | chr3:24573517-24572659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 648 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 148 | 
| Conread position: | 1-848 | 
| Cow position: | chr3:38251507-38252332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 863 | 
| Alignm identity: | 585 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 53 | 
| Conread position: | 1-848 | 
| Cow position: | chr3:49463910-49463061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 642 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 232 | 
| Conread position: | 1-849 | 
| Cow position: | chr3:6837691-6838540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 870 | 
| Alignm identity: | 661 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 182 | 
| Conread position: | 1-849 | 
| Cow position: | chr3:11510201-11509353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 568 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 184 | 
| Conread position: | 1-849 | 
| Cow position: | chr3:83766895-83767756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 661 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:596763-597610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 644 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 80 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:3653641-3652795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 865 | 
| Alignm identity: | 646 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 39 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:4030389-4031259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 888 | 
| Alignm identity: | 630 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 158 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:6864309-6865161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 871 | 
| Alignm identity: | 674 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:6896484-6897337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 615 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 173 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:10243303-10244171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 669 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:13724070-13723200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 674 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 128 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:15416108-15416978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 671 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:16225523-16226386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 670 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 158 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:17938360-17937507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 870 | 
| Alignm identity: | 605 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:18759776-18758893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 896 | 
| Alignm identity: | 652 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 150 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:18862084-18862949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 672 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 17 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:19941535-19942394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 646 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 161 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:20380075-20379207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 660 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 236 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:21179614-21178745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 877 | 
| Alignm identity: | 674 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 160 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:22725127-22724272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 642 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 239 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:23010014-23010863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 655 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 240 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:24264845-24265709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 669 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 37 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:24443452-24442595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 871 | 
| Alignm identity: | 672 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:26743229-26742365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 873 | 
| Alignm identity: | 666 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 240 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:27222695-27223527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 865 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 65 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:29129733-29130601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 881 | 
| Alignm identity: | 637 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 39 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:30320905-30321756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 667 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 181 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:30616295-30615432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 664 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 234 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:31021325-31022186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 873 | 
| Alignm identity: | 663 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 241 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:33326024-33326894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 879 | 
| Alignm identity: | 637 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 80 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:34504481-34503627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 865 | 
| Alignm identity: | 662 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:35611796-35612659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 653 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:37971686-37972538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 873 | 
| Alignm identity: | 662 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 204 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:38869216-38870077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 663 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 247 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:40048531-40049400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 675 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:43526097-43525228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 659 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:46505410-46506280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 652 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 238 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:47078972-47078101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 664 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:49542559-49541696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 882 | 
| Alignm identity: | 659 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:49563652-49564528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 881 | 
| Alignm identity: | 676 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 247 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:49611566-49610699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 667 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 240 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:49908370-49907523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 639 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 123 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:49998780-49999648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 668 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:50460991-50461810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 866 | 
| Alignm identity: | 607 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 128 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:53880625-53879754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 667 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:56485618-56484743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 880 | 
| Alignm identity: | 668 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:56645689-56644819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 669 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 244 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:57482083-57481234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 645 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 98 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:57742169-57743021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 650 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 66 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:64653309-64654179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 666 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 245 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:66622857-66623697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 639 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 90 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:66888554-66887686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 661 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 237 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:66969238-66968367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 659 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 239 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:68718064-68717199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 873 | 
| Alignm identity: | 662 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 80 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:68871108-68870243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 659 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 234 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:68889929-68889061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 659 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 128 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:69931192-69930325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 672 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 240 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:72632712-72633584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 682 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 243 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:72669913-72669049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 650 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 81 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:74060116-74060979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 677 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 238 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:75039203-75038330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 878 | 
| Alignm identity: | 679 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 246 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:76001313-76000449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 660 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 238 | 
| Conread position: | 1-850 | 
| Cow position: | chr3:81100728-81101590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 870 | 
| Alignm identity: | 666 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 170 | 
| Conread position: | 2-243 | 
| Cow position: | chr3:48210852-48211098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 52, 121 | 
| Conread position: | 2-454 | 
| Cow position: | chr3:32326780-32326326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 248 | 
| Conread position: | 2-535 | 
| Cow position: | chr3:48845649-48846187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 232 | 
| Conread position: | 2-675 | 
| Cow position: | chr3:63239370-63238707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 684 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 233 | 
| Conread position: | 2-850 | 
| Cow position: | chr3:2708227-2707363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 667 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 238 | 
| Conread position: | 2-850 | 
| Cow position: | chr3:14467234-14466355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 892 | 
| Alignm identity: | 640 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 83 | 
| Conread position: | 2-850 | 
| Cow position: | chr3:45185322-45184489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 651 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 22 | 
| Conread position: | 2-850 | 
| Cow position: | chr3:48602894-48603772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 883 | 
| Alignm identity: | 669 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 242 | 
| Conread position: | 3-289 | 
| Cow position: | chr3:50124352-50124074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 93, 63 | 
| Conread position: | 5-222 | 
| Cow position: | chr3:63689600-63689375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 5-293 | 
| Cow position: | chr3:69963163-69962876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 23 | 
| Conread position: | 5-315 | 
| Cow position: | chr3:35972740-35973063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 242 | 
| Conread position: | 5-848 | 
| Cow position: | chr3:45692372-45691550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 857 | 
| Alignm identity: | 590 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 40 | 
| Conread position: | 5-850 | 
| Cow position: | chr3:16294263-16293403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 868 | 
| Alignm identity: | 667 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 243 | 
| Conread position: | 5-850 | 
| Cow position: | chr3:24586586-24585716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 884 | 
| Alignm identity: | 653 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 134 | 
| Conread position: | 5-850 | 
| Cow position: | chr3:24638057-24638913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 642 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 70 | 
| Conread position: | 5-850 | 
| Cow position: | chr3:43190624-43189761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 871 | 
| Alignm identity: | 670 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 239 | 
| Conread position: | 5-850 | 
| Cow position: | chr3:48361593-48362432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 595 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 129 | 
| Conread position: | 6-483 | 
| Cow position: | chr3:29644004-29644494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 24 | 
| Conread position: | 6-843 | 
| Cow position: | chr3:9404580-9403761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 846 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 61 | 
| Conread position: | 6-850 | 
| Cow position: | chr3:1482681-1483531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 863 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 194 | 
| Conread position: | 6-850 | 
| Cow position: | chr3:45977150-45978011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 869 | 
| Alignm identity: | 651 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 234 | 
| Conread position: | 6-850 | 
| Cow position: | chr3:53048133-53047290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 868 | 
| Alignm identity: | 648 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 24 | 
| Conread position: | 7-615 | 
| Cow position: | chr3:19798504-19797884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 232 | 
| Conread position: | 7-850 | 
| Cow position: | chr3:5474208-5475051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 866 | 
| Alignm identity: | 645 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 81 | 
| Conread position: | 7-850 | 
| Cow position: | chr3:7246455-7245597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 866 | 
| Alignm identity: | 659 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 68 | 
| Conread position: | 7-850 | 
| Cow position: | chr3:19883124-19883970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 864 | 
| Alignm identity: | 654 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 47 | 
| Conread position: | 7-850 | 
| Cow position: | chr3:40337495-40336634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 870 | 
| Alignm identity: | 663 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 232 | 
| Conread position: | 7-850 | 
| Cow position: | chr3:44926470-44927325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 870 | 
| Alignm identity: | 652 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 25 | 
| Conread position: | 7-850 | 
| Cow position: | chr3:56297032-56297896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 869 | 
| Alignm identity: | 654 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 231 | 
| Conread position: | 8-465 | 
| Cow position: | chr3:72389621-72390068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 232 | 
| Conread position: | 9-847 | 
| Cow position: | chr3:51489971-51490804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 860 | 
| Alignm identity: | 569 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 16 | 
| Conread position: | 10-308 | 
| Cow position: | chr3:6441314-6441616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 225 | 
| Conread position: | 10-429 | 
| Cow position: | chr3:19795558-19795147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 54 | 
| Conread position: | 10-710 | 
| Cow position: | chr3:37280046-37280759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 718 | 
| Alignm identity: | 500 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 234 | 
| Conread position: | 10-747 | 
| Cow position: | chr3:27783630-27782929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 746 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 82 | 
| Conread position: | 10-848 | 
| Cow position: | chr3:39555933-39555090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 864 | 
| Alignm identity: | 598 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 151 | 
| Conread position: | 10-850 | 
| Cow position: | chr3:7477270-7476410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 868 | 
| Alignm identity: | 669 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 234 | 
| Conread position: | 10-850 | 
| Cow position: | chr3:40826048-40826908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 668 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 234 | 
| Conread position: | 10-850 | 
| Cow position: | chr3:68697316-68696463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 864 | 
| Alignm identity: | 653 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 231 | 
| Conread position: | 11-233 | 
| Cow position: | chr3:63201696-63201906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 5, 0 | 
| Conread position: | 11-391 | 
| Cow position: | chr3:18461487-18461099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 234 | 
| Conread position: | 11-519 | 
| Cow position: | chr3:67545934-67545436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 219 | 
| Conread position: | 12-503 | 
| Cow position: | chr3:11182295-11181809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 88, 110 | 
| Conread position: | 13-849 | 
| Cow position: | chr3:61677195-61678043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 863 | 
| Alignm identity: | 654 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 190 | 
| Conread position: | 14-403 | 
| Cow position: | chr3:36402255-36402654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 223 | 
| Conread position: | 14-438 | 
| Cow position: | chr3:10370656-10371078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 221 | 
| Conread position: | 14-850 | 
| Cow position: | chr3:19754073-19753224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 862 | 
| Alignm identity: | 670 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 230 | 
| Conread position: | 15-846 | 
| Cow position: | chr3:77426374-77427175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 851 | 
| Alignm identity: | 626 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 36 | 
| Conread position: | 19-724 | 
| Cow position: | chr3:19946881-19947578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 725 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 223 | 
| Conread position: | 19-848 | 
| Cow position: | chr3:19108226-19109072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 861 | 
| Alignm identity: | 596 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 127 | 
| Conread position: | 20-848 | 
| Cow position: | chr3:56100940-56101760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 854 | 
| Alignm identity: | 582 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 23 | 
| Conread position: | 27-848 | 
| Cow position: | chr3:27866327-27867162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 851 | 
| Alignm identity: | 628 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 177 | 
| Conread position: | 31-850 | 
| Cow position: | chr3:227203-226380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 844 | 
| Alignm identity: | 633 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 213 | 
| Conread position: | 34-473 | 
| Cow position: | chr3:41314754-41315195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 11 | 
| Conread position: | 38-425 | 
| Cow position: | chr3:53518515-53518907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 206 | 
| Conread position: | 40-382 | 
| Cow position: | chr3:80817297-80817651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 59, 259 | 
| Conread position: | 40-525 | 
| Cow position: | chr3:66651644-66651168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 41 | 
| Conread position: | 41-505 | 
| Cow position: | chr3:77706508-77706979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 198 | 
| Conread position: | 44-465 | 
| Cow position: | chr3:58128744-58129161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 55, 26 | 
| Conread position: | 45-850 | 
| Cow position: | chr3:36875381-36874549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 838 | 
| Alignm identity: | 633 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 189 | 
| Conread position: | 46-625 | 
| Cow position: | chr3:522808-523367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 216 | 
| Conread position: | 46-680 | 
| Cow position: | chr3:74850459-74849813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 658 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 91 | 
| Conread position: | 48-850 | 
| Cow position: | chr3:49605750-49604935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 825 | 
| Alignm identity: | 630 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 196 | 
| Conread position: | 49-837 | 
| Cow position: | chr3:64170922-64171728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 827 | 
| Alignm identity: | 555 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 33 | 
| Conread position: | 50-850 | 
| Cow position: | chr3:56147979-56148804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 828 | 
| Alignm identity: | 620 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 232 | 
| Conread position: | 52-353 | 
| Cow position: | chr3:62794580-62794272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 47, 197 | 
| Conread position: | 55-589 | 
| Cow position: | chr3:14053969-14054508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 189 | 
| Conread position: | 55-850 | 
| Cow position: | chr3:2866959-2866143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 821 | 
| Alignm identity: | 619 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 184 | 
| Conread position: | 56-848 | 
| Cow position: | chr3:58208154-58207350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 827 | 
| Alignm identity: | 536 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 69 | 
| Conread position: | 59-735 | 
| Cow position: | chr3:1740172-1739483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 695 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 91 | 
| Conread position: | 59-850 | 
| Cow position: | chr3:54568734-54569504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 805 | 
| Alignm identity: | 525 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 8 | 
| Conread position: | 60-850 | 
| Cow position: | chr3:58950161-58950970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 816 | 
| Alignm identity: | 605 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 174 | 
| Conread position: | 61-850 | 
| Cow position: | chr3:76864133-76864943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 815 | 
| Alignm identity: | 617 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 183 | 
| Conread position: | 63-580 | 
| Cow position: | chr3:45567914-45568458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 176 | 
| Conread position: | 63-850 | 
| Cow position: | chr3:38095603-38096412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 815 | 
| Alignm identity: | 611 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 90 | 
| Conread position: | 65-735 | 
| Cow position: | chr3:32491007-32490323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 518 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 179 | 
| Conread position: | 65-850 | 
| Cow position: | chr3:26992835-26993633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 805 | 
| Alignm identity: | 585 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 16 | 
| Conread position: | 74-850 | 
| Cow position: | chr3:57455687-57456460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 798 | 
| Alignm identity: | 576 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 139 | 
| Conread position: | 76-435 | 
| Cow position: | chr3:2852764-2852393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 47 | 
| Conread position: | 82-561 | 
| Cow position: | chr3:63277130-63276656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 69 | 
| Conread position: | 84-850 | 
| Cow position: | chr3:21593009-21593793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 791 | 
| Alignm identity: | 608 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 155 | 
| Conread position: | 86-771 | 
| Cow position: | chr3:63736119-63736821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 709 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 144 | 
| Conread position: | 86-800 | 
| Cow position: | chr3:61173224-61173949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 735 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 75 | 
| Conread position: | 86-847 | 
| Cow position: | chr3:31934606-31933830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 561 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 146 | 
| Conread position: | 86-848 | 
| Cow position: | chr3:50112291-50111546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 55 | 
| Conread position: | 100-765 | 
| Cow position: | chr3:54654436-54653756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 684 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 188 | 
| Conread position: | 102-288 | 
| Cow position: | chr3:21103047-21102860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 60, 8 | 
| Conread position: | 102-473 | 
| Cow position: | chr3:49253260-49253631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 185 | 
| Conread position: | 102-850 | 
| Cow position: | chr3:53413783-53414524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 777 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 128 | 
| Conread position: | 102-850 | 
| Cow position: | chr3:58034898-58034156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 768 | 
| Alignm identity: | 554 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 145 | 
| Conread position: | 103-368 | 
| Cow position: | chr3:55245087-55245353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 78, 137 | 
| Conread position: | 106-829 | 
| Cow position: | chr3:46224649-46225371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 738 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 131 | 
| Conread position: | 106-850 | 
| Cow position: | chr3:3837834-3837096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 763 | 
| Alignm identity: | 566 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 134 | 
| Conread position: | 107-850 | 
| Cow position: | chr3:65988671-65989418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 764 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 137 | 
| Conread position: | 108-296 | 
| Cow position: | chr3:65084144-65084332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 71, 132 | 
| Conread position: | 118-849 | 
| Cow position: | chr3:37627658-37628393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 748 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 134 | 
| Conread position: | 121-847 | 
| Cow position: | chr3:60178325-60177603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 743 | 
| Alignm identity: | 492 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 36 | 
| Conread position: | 121-850 | 
| Cow position: | chr3:2366124-2365405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 748 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 114 | 
| Conread position: | 122-850 | 
| Cow position: | chr3:5951849-5951114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 743 | 
| Alignm identity: | 555 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 118 | 
| Conread position: | 124-509 | 
| Cow position: | chr3:14881753-14881367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 63, 125 | 
| Conread position: | 125-473 | 
| Cow position: | chr3:77273022-77272676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 208, 106 | 
| Conread position: | 125-849 | 
| Cow position: | chr3:2904669-2903945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 742 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 111 | 
| Conread position: | 126-850 | 
| Cow position: | chr3:37893604-37894341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 746 | 
| Alignm identity: | 566 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 114 | 
| Conread position: | 131-570 | 
| Cow position: | chr3:5446136-5445700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 103 | 
| Conread position: | 131-712 | 
| Cow position: | chr3:68510560-68509972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 104 | 
| Conread position: | 134-740 | 
| Cow position: | chr3:42977805-42977198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 101 | 
| Conread position: | 134-850 | 
| Cow position: | chr3:7856203-7856933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 740 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 107 | 
| Conread position: | 136-850 | 
| Cow position: | chr3:64376927-64376204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 736 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 29 | 
| Conread position: | 137-848 | 
| Cow position: | chr3:40344020-40344731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 722 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 89 | 
| Conread position: | 137-850 | 
| Cow position: | chr3:18886247-18886969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 734 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 94 | 
| Conread position: | 148-850 | 
| Cow position: | chr3:19880844-19881561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 724 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 87 | 
| Conread position: | 149-850 | 
| Cow position: | chr3:3552118-3552827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 716 | 
| Alignm identity: | 538 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 86 | 
| Conread position: | 152-850 | 
| Cow position: | chr3:47273078-47272367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 717 | 
| Alignm identity: | 537 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 30 | 
| Conread position: | 163-545 | 
| Cow position: | chr3:28093944-28094329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 72 | 
| Conread position: | 164-720 | 
| Cow position: | chr3:2790560-2791122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 79 | 
| Conread position: | 166-850 | 
| Cow position: | chr3:66830127-66829437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 702 | 
| Alignm identity: | 520 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 35 | 
| Conread position: | 167-850 | 
| Cow position: | chr3:14679903-14680593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 701 | 
| Alignm identity: | 533 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 60 | 
| Conread position: | 174-850 | 
| Cow position: | chr3:28435876-28435193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 57 | 
| Conread position: | 176-850 | 
| Cow position: | chr3:6528817-6529504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 692 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 60 | 
| Conread position: | 180-850 | 
| Cow position: | chr3:12798222-12797550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 690 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 47 | 
| Conread position: | 181-422 | 
| Cow position: | chr3:64025489-64025249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 149, 50 | 
| Conread position: | 181-451 | 
| Cow position: | chr3:50941403-50941670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 52 | 
| Conread position: | 181-727 | 
| Cow position: | chr3:35342480-35343032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 55 | 
| Conread position: | 181-846 | 
| Cow position: | chr3:55373920-55374587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 683 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 50 | 
| Conread position: | 181-850 | 
| Cow position: | chr3:944525-945206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 53 | 
| Conread position: | 181-850 | 
| Cow position: | chr3:2572357-2573039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 532 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 55 | 
| Conread position: | 181-850 | 
| Cow position: | chr3:2834709-2834027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 528 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 50 | 
| Conread position: | 181-850 | 
| Cow position: | chr3:7155977-7155295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 53 | 
| Conread position: | 181-850 | 
| Cow position: | chr3:20795123-20795805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 532 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 46 | 
| Conread position: | 182-584 | 
| Cow position: | chr3:32703328-32702945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 271, 45 | 
| Conread position: | 182-850 | 
| Cow position: | chr3:14284565-14285238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 683 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 51 | 
| Conread position: | 183-721 | 
| Cow position: | chr3:76187364-76187914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 48 | 
| Conread position: | 185-850 | 
| Cow position: | chr3:823257-822578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 684 | 
| Alignm identity: | 523 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 46 | 
| Conread position: | 185-850 | 
| Cow position: | chr3:43084076-43084734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 51 | 
| Conread position: | 190-841 | 
| Cow position: | chr3:24530541-24531178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 659 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 37 | 
| Conread position: | 194-428 | 
| Cow position: | chr3:36614385-36614155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 139, 19 | 
| Conread position: | 195-382 | 
| Cow position: | chr3:57835747-57835563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 138, 36 | 
| Conread position: | 195-441 | 
| Cow position: | chr3:49429624-49429865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 138, 39 | 
| Conread position: | 195-535 | 
| Cow position: | chr3:12987172-12986834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 41 | 
| Conread position: | 195-735 | 
| Cow position: | chr3:33269082-33269613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 258, 41 | 
| Conread position: | 195-741 | 
| Cow position: | chr3:49134691-49134142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 10 | 
| Conread position: | 195-848 | 
| Cow position: | chr3:64317584-64318246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 247, 41 | 
| Conread position: | 195-850 | 
| Cow position: | chr3:77225579-77226229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 673 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 27 | 
| Conread position: | 198-809 | 
| Cow position: | chr3:73636728-73637346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 28 | 
| Conread position: | 198-850 | 
| Cow position: | chr3:35885268-35884610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 674 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 39 | 
| Conread position: | 199-778 | 
| Cow position: | chr3:3983960-3984540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 244, 28 | 
| Conread position: | 202-425 | 
| Cow position: | chr3:53388750-53388528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 131, 18 | 
| Conread position: | 202-449 | 
| Cow position: | chr3:60142871-60143110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 131, 32 | 
| Conread position: | 202-850 | 
| Cow position: | chr3:52150435-52149774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 34 | 
| Conread position: | 214-735 | 
| Cow position: | chr3:45311656-45312168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 14 | 
| Conread position: | 218-472 | 
| Cow position: | chr3:68402815-68402558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 17, 7 | 
| Conread position: | 230-735 | 
| Cow position: | chr3:21016911-21016409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 20, 53 | 
| Conread position: | 233-635 | 
| Cow position: | chr3:34027998-34027587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 52 | 
| Conread position: | 235-584 | 
| Cow position: | chr3:52664281-52664626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 58, 119 | 
| Conread position: | 235-846 | 
| Cow position: | chr3:15809404-15809992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 285, 48 | 
| Conread position: | 236-469 | 
| Cow position: | chr3:29578753-29578519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 46 | 
| Conread position: | 236-508 | 
| Cow position: | chr3:52451298-52451570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 140, 56 | 
| Conread position: | 236-848 | 
| Cow position: | chr3:70914383-70913754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 48 | 
| Conread position: | 236-849 | 
| Cow position: | chr3:30938382-30939012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 46 | 
| Conread position: | 236-850 | 
| Cow position: | chr3:40521058-40520428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 492 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 46 | 
| Conread position: | 239-662 | 
| Cow position: | chr3:44100933-44101369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 13 | 
| Conread position: | 241-838 | 
| Cow position: | chr3:63689003-63688412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 617 | 
| Alignm identity: | 444 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 42 | 
| Conread position: | 242-765 | 
| Cow position: | chr3:80307123-80307641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 92, 54 | 
| Conread position: | 243-849 | 
| Cow position: | chr3:65473319-65473938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 35 | 
| Conread position: | 250-850 | 
| Cow position: | chr3:11417442-11418058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 33 | 
| Conread position: | 272-848 | 
| Cow position: | chr3:31224197-31224795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 21 | 
| Conread position: | 283-746 | 
| Cow position: | chr3:38862663-38863119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 72 | 
| Conread position: | 287-800 | 
| Cow position: | chr3:39327480-39327997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 216 | 
| Conread position: | 302-712 | 
| Cow position: | chr3:30908754-30909183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 43 | 
| Conread position: | 304-426 | 
| Cow position: | chr3:22281522-22281399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 29, 55 | 
| Conread position: | 304-774 | 
| Cow position: | chr3:27454984-27454505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
Show alignments to all cow chromosomes.
