Cow genome map

Conread name: Utr1-UTR010044B01

Conread position: 1-225
Cow position: chr5:54858501-54858282 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 178, 90

Conread position: 1-236
Cow position: chr5:38737345-38737585 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 75, 122

Conread position: 1-258
Cow position: chr5:32775360-32775622 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-261
Cow position: chr5:47342261-47342526 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 238

Conread position: 1-265
Cow position: chr5:26512110-26511841 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-276
Cow position: chr5:27005645-27005929 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 180, 39

Conread position: 1-280
Cow position: chr5:74036065-74036349 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-293
Cow position: chr5:27549912-27549616 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 237

Conread position: 1-293
Cow position: chr5:57124058-57124345 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 22

Conread position: 1-316
Cow position: chr5:10513726-10513407 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-325
Cow position: chr5:35207223-35206901 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 70

Conread position: 1-326
Cow position: chr5:3200897-3201228 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 235

Conread position: 1-326
Cow position: chr5:34472626-34472300 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 99, 149

Conread position: 1-326
Cow position: chr5:50688360-50688688 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-351
Cow position: chr5:15361711-15362067 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 238

Conread position: 1-360
Cow position: chr5:14877583-14877221 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 233

Conread position: 1-370
Cow position: chr5:29826916-29827289 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 1-380
Cow position: chr5:11153911-11153529 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-394
Cow position: chr5:46003102-46002703 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-401
Cow position: chr5:445068-445469 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 31

Conread position: 1-404
Cow position: chr5:59083677-59083280 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 145

Conread position: 1-405
Cow position: chr5:8177656-8178064 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 243

Conread position: 1-406
Cow position: chr5:70127337-70127729 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 99

Conread position: 1-408
Cow position: chr5:41980023-41980427 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 58

Conread position: 1-409
Cow position: chr5:21522188-21521772 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 246

Conread position: 1-409
Cow position: chr5:37084326-37083913 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-410
Cow position: chr5:5716506-5716093 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 243

Conread position: 1-411
Cow position: chr5:27196532-27196117 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-411
Cow position: chr5:38285843-38286247 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 120

Conread position: 1-411
Cow position: chr5:54695254-54694841 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 241

Conread position: 1-414
Cow position: chr5:18119931-18119513 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-414
Cow position: chr5:28948195-28947774 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 240

Conread position: 1-414
Cow position: chr5:57614629-57614226 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 105, 142

Conread position: 1-420
Cow position: chr5:13808126-13807707 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 234

Conread position: 1-422
Cow position: chr5:1641244-1640818 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-425
Cow position: chr5:4755179-4754754 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 42

Conread position: 1-428
Cow position: chr5:413156-412731 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 132

Conread position: 1-431
Cow position: chr5:39448884-39448453 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 124

Conread position: 1-436
Cow position: chr5:28222678-28222253 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 21

Conread position: 1-451
Cow position: chr5:32953874-32954329 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 240

Conread position: 1-473
Cow position: chr5:59278691-59279164 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 150

Conread position: 1-500
Cow position: chr5:61232258-61231761 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 177

Conread position: 1-510
Cow position: chr5:34525955-34526460 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 180

Conread position: 1-531
Cow position: chr5:30844377-30844906 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 22

Conread position: 1-547
Cow position: chr5:7276381-7276931 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 240

Conread position: 1-559
Cow position: chr5:26076652-26076090 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 88

Conread position: 1-579
Cow position: chr5:6615745-6615162 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-584
Cow position: chr5:31098706-31098111 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 153

Conread position: 1-588
Cow position: chr5:56932270-56931706 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 1-603
Cow position: chr5:50604784-50604193 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 140

Conread position: 1-607
Cow position: chr5:38661879-38662497 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-608
Cow position: chr5:26625281-26624664 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 130

Conread position: 1-619
Cow position: chr5:37610394-37609770 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-621
Cow position: chr5:30156906-30157539 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 1-627
Cow position: chr5:12729590-12728975 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-635
Cow position: chr5:27655299-27655916 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 37

Conread position: 1-653
Cow position: chr5:23957779-23957121 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-708
Cow position: chr5:9091871-9091158 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 240

Conread position: 1-729
Cow position: chr5:42507307-42508039 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-732
Cow position: chr5:59145922-59146669 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 170

Conread position: 1-750
Cow position: chr5:49131754-49132501 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 38

Conread position: 1-776
Cow position: chr5:14543754-14542961 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 1-789
Cow position: chr5:48534409-48535190 (view UCSC Genome Browser custom track)
Alignm length: 809
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 31

Conread position: 1-804
Cow position: chr5:64845710-64844901 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 622
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 155

Conread position: 1-811
Cow position: chr5:6585913-6585079 (view UCSC Genome Browser custom track)
Alignm length: 840
Alignm identity: 634
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-836
Cow position: chr5:9003563-9002708 (view UCSC Genome Browser custom track)
Alignm length: 860
Alignm identity: 639
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-837
Cow position: chr5:4434957-4434100 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-837
Cow position: chr5:48226026-48225180 (view UCSC Genome Browser custom track)
Alignm length: 860
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 256

Conread position: 1-840
Cow position: chr5:4387732-4388588 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 648
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 149

Conread position: 1-841
Cow position: chr5:14637031-14636171 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 669
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 238

Conread position: 1-841
Cow position: chr5:49117803-49116943 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 673
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 135

Conread position: 1-843
Cow position: chr5:7141553-7140685 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 74

Conread position: 1-843
Cow position: chr5:19979368-19978505 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 675
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 238

Conread position: 1-843
Cow position: chr5:49221945-49221088 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 659
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 238

Conread position: 1-848
Cow position: chr5:12502623-12501754 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 36

Conread position: 1-848
Cow position: chr5:25929142-25928289 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 131

Conread position: 1-848
Cow position: chr5:27490508-27491389 (view UCSC Genome Browser custom track)
Alignm length: 886
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 265

Conread position: 1-848
Cow position: chr5:59770596-59771463 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 1-849
Cow position: chr5:46666621-46667490 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 148

Conread position: 1-850
Cow position: chr5:443763-442892 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 1-850
Cow position: chr5:1339376-1338507 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 235

Conread position: 1-850
Cow position: chr5:2917013-2917875 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 241

Conread position: 1-850
Cow position: chr5:2976333-2977204 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr5:3501580-3500714 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 1-850
Cow position: chr5:3788775-3789640 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 243

Conread position: 1-850
Cow position: chr5:3970070-3970939 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 659
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 240

Conread position: 1-850
Cow position: chr5:4016334-4015455 (view UCSC Genome Browser custom track)
Alignm length: 888
Alignm identity: 676
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 252

Conread position: 1-850
Cow position: chr5:4963828-4962970 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 663
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 25

Conread position: 1-850
Cow position: chr5:5105772-5106640 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr5:5925413-5924566 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 648
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 239

Conread position: 1-850
Cow position: chr5:6772115-6772982 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr5:7395806-7396660 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 100

Conread position: 1-850
Cow position: chr5:10067003-10066133 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 80

Conread position: 1-850
Cow position: chr5:10921389-10922262 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 663
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 245

Conread position: 1-850
Cow position: chr5:23353293-23354161 (view UCSC Genome Browser custom track)
Alignm length: 891
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 252

Conread position: 1-850
Cow position: chr5:23829622-23828780 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 639
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 243

Conread position: 1-850
Cow position: chr5:24101198-24102067 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 169

Conread position: 1-850
Cow position: chr5:24298561-24299430 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 673
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 227

Conread position: 1-850
Cow position: chr5:27178195-27179052 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 653
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 290

Conread position: 1-850
Cow position: chr5:29633976-29634846 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 1-850
Cow position: chr5:29743009-29742141 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 1-850
Cow position: chr5:30581884-30582742 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 161

Conread position: 1-850
Cow position: chr5:31120659-31119776 (view UCSC Genome Browser custom track)
Alignm length: 892
Alignm identity: 649
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 234

Conread position: 1-850
Cow position: chr5:32755896-32755034 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 660
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 234

Conread position: 1-850
Cow position: chr5:34191471-34192337 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 650
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 34

Conread position: 1-850
Cow position: chr5:34299419-34300293 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 31

Conread position: 1-850
Cow position: chr5:37379631-37380503 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 667
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 248

Conread position: 1-850
Cow position: chr5:37734921-37735792 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 673
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 239

Conread position: 1-850
Cow position: chr5:41066572-41067428 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 661
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr5:44709832-44708955 (view UCSC Genome Browser custom track)
Alignm length: 888
Alignm identity: 676
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 234

Conread position: 1-850
Cow position: chr5:46626718-46625859 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 635
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 80

Conread position: 1-850
Cow position: chr5:46671154-46672025 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 240

Conread position: 1-850
Cow position: chr5:46686060-46685220 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 638
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 158

Conread position: 1-850
Cow position: chr5:46735732-46734862 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 670
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 246

Conread position: 1-850
Cow position: chr5:46779065-46779932 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 668
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 39

Conread position: 1-850
Cow position: chr5:47561009-47560143 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 659
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 143

Conread position: 1-850
Cow position: chr5:48805902-48805053 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 27

Conread position: 1-850
Cow position: chr5:49521267-49522118 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 49

Conread position: 1-850
Cow position: chr5:51166759-51165892 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 668
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 169

Conread position: 1-850
Cow position: chr5:51745770-51746635 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 669
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 234

Conread position: 1-850
Cow position: chr5:52823659-52822791 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 671
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr5:54786559-54785692 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 660
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 234

Conread position: 1-850
Cow position: chr5:54928372-54927507 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr5:54930700-54929835 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr5:58191468-58192332 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 658
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 91

Conread position: 1-850
Cow position: chr5:58198558-58199426 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 658
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 134

Conread position: 1-850
Cow position: chr5:58771322-58770455 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 677
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 243

Conread position: 1-850
Cow position: chr5:59063992-59064860 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 1-850
Cow position: chr5:64779456-64778584 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 674
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 43

Conread position: 1-850
Cow position: chr5:72856421-72857292 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 238

Conread position: 2-435
Cow position: chr5:12680041-12679597 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 242

Conread position: 2-668
Cow position: chr5:25901913-25901252 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 168

Conread position: 2-691
Cow position: chr5:29768625-29769310 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 57

Conread position: 2-850
Cow position: chr5:6152279-6151415 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 674
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 92

Conread position: 2-850
Cow position: chr5:8997480-8996598 (view UCSC Genome Browser custom track)
Alignm length: 887
Alignm identity: 647
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 297

Conread position: 2-850
Cow position: chr5:18558854-18558001 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 663
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 237

Conread position: 2-850
Cow position: chr5:52830247-52829370 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 257

Conread position: 3-301
Cow position: chr5:31284645-31284947 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 236

Conread position: 5-221
Cow position: chr5:70531857-70531637 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 89, 23

Conread position: 5-316
Cow position: chr5:40347729-40347414 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 234

Conread position: 5-405
Cow position: chr5:18704210-18704617 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 231

Conread position: 5-473
Cow position: chr5:25232591-25232124 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 183

Conread position: 5-763
Cow position: chr5:24644318-24643553 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 291

Conread position: 5-800
Cow position: chr5:40791397-40792195 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 81

Conread position: 5-819
Cow position: chr5:4349445-4348619 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 290

Conread position: 5-848
Cow position: chr5:67653883-67654740 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 613
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 224

Conread position: 5-850
Cow position: chr5:18249610-18250464 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 649
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 233

Conread position: 6-280
Cow position: chr5:57928819-57928540 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 93, 229

Conread position: 6-404
Cow position: chr5:58462301-58462691 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 183

Conread position: 6-846
Cow position: chr5:41391284-41392139 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 123

Conread position: 7-310
Cow position: chr5:10773550-10773245 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 216

Conread position: 7-315
Cow position: chr5:58000241-58000547 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 96, 234

Conread position: 7-470
Cow position: chr5:57336860-57336391 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 237

Conread position: 7-646
Cow position: chr5:45180539-45179891 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 236

Conread position: 7-850
Cow position: chr5:11632432-11631568 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 232

Conread position: 7-850
Cow position: chr5:12920952-12921813 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 643
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 228

Conread position: 7-850
Cow position: chr5:48025831-48026685 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 651
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 77

Conread position: 7-850
Cow position: chr5:68337940-68337105 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 632
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 97

Conread position: 8-481
Cow position: chr5:13531339-13530873 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 83

Conread position: 11-288
Cow position: chr5:64010297-64010022 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 56

Conread position: 11-514
Cow position: chr5:42745332-42745834 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 226

Conread position: 11-561
Cow position: chr5:57920483-57921031 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 181

Conread position: 11-848
Cow position: chr5:63312956-63312104 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 17

Conread position: 13-547
Cow position: chr5:54361858-54362397 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 122

Conread position: 15-850
Cow position: chr5:10854266-10853417 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 642
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 224

Conread position: 23-288
Cow position: chr5:41332979-41333256 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 14

Conread position: 23-681
Cow position: chr5:41357291-41356603 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 470

Conread position: 24-746
Cow position: chr5:73443973-73444706 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 122

Conread position: 24-850
Cow position: chr5:41952503-41951652 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 639
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 128

Conread position: 25-850
Cow position: chr5:27690569-27691401 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 56

Conread position: 28-431
Cow position: chr5:5859533-5859948 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 210

Conread position: 32-486
Cow position: chr5:15316312-15316766 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 23

Conread position: 32-828
Cow position: chr5:10813786-10814586 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 116

Conread position: 40-846
Cow position: chr5:26057717-26058530 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 41

Conread position: 40-850
Cow position: chr5:42282757-42283580 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 622
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 180

Conread position: 42-445
Cow position: chr5:32089201-32088798 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 107

Conread position: 46-846
Cow position: chr5:28015634-28016469 (view UCSC Genome Browser custom track)
Alignm length: 843
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 100

Conread position: 47-850
Cow position: chr5:6456070-6455246 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 634
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 192

Conread position: 48-702
Cow position: chr5:46649677-46650359 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 334

Conread position: 50-572
Cow position: chr5:3440933-3441443 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 77

Conread position: 50-850
Cow position: chr5:18900932-18901730 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 611
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 75

Conread position: 51-608
Cow position: chr5:66909701-66910270 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 193

Conread position: 52-751
Cow position: chr5:17646474-17645771 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 112

Conread position: 52-850
Cow position: chr5:69519214-69520025 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 47

Conread position: 55-850
Cow position: chr5:62435727-62436536 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 184

Conread position: 56-436
Cow position: chr5:58244193-58243809 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 178

Conread position: 56-800
Cow position: chr5:30293921-30294661 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 200

Conread position: 61-648
Cow position: chr5:57984233-57983648 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 179

Conread position: 69-748
Cow position: chr5:26466269-26466932 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 15

Conread position: 72-271
Cow position: chr5:55630393-55630597 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 31, 176

Conread position: 75-635
Cow position: chr5:10299089-10299661 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 169

Conread position: 83-800
Cow position: chr5:34524611-34523883 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 49

Conread position: 85-850
Cow position: chr5:5936935-5937723 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 99

Conread position: 86-850
Cow position: chr5:37625493-37626263 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 158

Conread position: 97-502
Cow position: chr5:26120091-26120483 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 271
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 91, 10

Conread position: 99-721
Cow position: chr5:47360868-47361483 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 135

Conread position: 100-850
Cow position: chr5:41229393-41228630 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 132

Conread position: 107-588
Cow position: chr5:6840564-6840064 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 127

Conread position: 114-850
Cow position: chr5:10840802-10840059 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 77

Conread position: 121-412
Cow position: chr5:46796357-46796652 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 54, 49

Conread position: 121-850
Cow position: chr5:54124763-54125482 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 114

Conread position: 127-375
Cow position: chr5:29432910-29432666 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 16

Conread position: 131-763
Cow position: chr5:48575133-48574502 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 98

Conread position: 131-850
Cow position: chr5:21188903-21189634 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 88

Conread position: 132-850
Cow position: chr5:710469-709735 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 103

Conread position: 134-850
Cow position: chr5:18119287-18118558 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 97

Conread position: 137-431
Cow position: chr5:41524584-41524302 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 61

Conread position: 137-848
Cow position: chr5:58003925-58004640 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 62

Conread position: 148-322
Cow position: chr5:1382568-1382742 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 87

Conread position: 148-348
Cow position: chr5:41293511-41293704 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 9

Conread position: 148-555
Cow position: chr5:37424424-37424834 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 92

Conread position: 148-584
Cow position: chr5:50675889-50675451 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 92

Conread position: 148-719
Cow position: chr5:24633340-24632760 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 22

Conread position: 148-850
Cow position: chr5:294963-295678 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 89

Conread position: 148-850
Cow position: chr5:18667005-18667724 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 91

Conread position: 148-850
Cow position: chr5:53076169-53075453 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 86

Conread position: 150-810
Cow position: chr5:22857918-22857256 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 24

Conread position: 153-388
Cow position: chr5:46706579-46706805 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 29

Conread position: 158-840
Cow position: chr5:51684926-51684213 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 73

Conread position: 170-850
Cow position: chr5:46817378-46816686 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 61

Conread position: 173-422
Cow position: chr5:15676643-15676890 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 163, 57

Conread position: 177-850
Cow position: chr5:1059839-1059150 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 105

Conread position: 180-603
Cow position: chr5:6986751-6986326 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 67

Conread position: 180-648
Cow position: chr5:1229540-1230012 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 54

Conread position: 181-334
Cow position: chr5:54454170-54454320 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 121, 21

Conread position: 181-412
Cow position: chr5:45702794-45703023 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 152, 55

Conread position: 181-472
Cow position: chr5:49970574-49970863 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 55

Conread position: 181-609
Cow position: chr5:11357861-11358293 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 55

Conread position: 181-665
Cow position: chr5:2203656-2203167 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 50

Conread position: 181-846
Cow position: chr5:15761634-15760955 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 45

Conread position: 181-848
Cow position: chr5:49565313-49565979 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 50

Conread position: 181-850
Cow position: chr5:6031720-6032402 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 50

Conread position: 181-850
Cow position: chr5:73486162-73485471 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 54

Conread position: 182-846
Cow position: chr5:13258338-13258991 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 48

Conread position: 182-850
Cow position: chr5:53834390-53835085 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 59

Conread position: 183-848
Cow position: chr5:51068954-51069619 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 39

Conread position: 185-838
Cow position: chr5:31634160-31634831 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 46

Conread position: 186-850
Cow position: chr5:29256471-29255797 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 45

Conread position: 186-850
Cow position: chr5:34670343-34669678 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 63

Conread position: 194-534
Cow position: chr5:2699425-2699087 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 42

Conread position: 195-396
Cow position: chr5:31559091-31559286 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 149, 32

Conread position: 195-846
Cow position: chr5:35446867-35446226 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 38

Conread position: 197-850
Cow position: chr5:6125411-6124746 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 39

Conread position: 197-850
Cow position: chr5:31709051-31709708 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 39

Conread position: 205-850
Cow position: chr5:33776008-33775367 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 32

Conread position: 206-721
Cow position: chr5:29458683-29459173 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 30

Conread position: 209-497
Cow position: chr5:14905288-14905002 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 25

Conread position: 216-732
Cow position: chr5:6735858-6735345 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 117, 20

Conread position: 216-850
Cow position: chr5:39935859-39936515 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 17

Conread position: 220-850
Cow position: chr5:55630834-55631481 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 37

Conread position: 236-680
Cow position: chr5:38848798-38848346 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 46

Conread position: 236-837
Cow position: chr5:54136851-54136233 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 46

Conread position: 241-704
Cow position: chr5:14782432-14781969 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 42

Conread position: 241-848
Cow position: chr5:41954493-41953893 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 42

Conread position: 241-850
Cow position: chr5:25912525-25913135 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 52

Conread position: 245-850
Cow position: chr5:3544104-3544713 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 37

Conread position: 251-847
Cow position: chr5:17026880-17027479 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 32

Conread position: 252-503
Cow position: chr5:26348686-26348436 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 201, 31

Conread position: 253-736
Cow position: chr5:26135469-26134972 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 30

Conread position: 257-850
Cow position: chr5:46676421-46677030 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 262-831
Cow position: chr5:15454591-15455149 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 9

Conread position: 274-842
Cow position: chr5:34683535-34682953 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 18

Conread position: 282-850
Cow position: chr5:27907634-27907051 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 330

Conread position: 287-631
Cow position: chr5:69770918-69771252 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 260, 165

Conread position: 304-850
Cow position: chr5:21827681-21828248 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 71

Conread position: 310-794
Cow position: chr5:71457185-71456691 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 374

Show alignments to all cow chromosomes.