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Cow genome map

           
Conread name:
           
Utr1-UTR010044B01
        

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:2189427-2189662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 140
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:10110259-10110481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:2222513-2222265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr9:5526003-5525747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 228
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr9:18109037-18109309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
98, 160
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr9:29337380-29337666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 163
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:34240484-34240171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr9:3311234-3311551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
81, 179
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr9:56745380-56745050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr9:202675-202338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 249
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr9:1000080-1000411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 233
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr9:51179286-51178942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 299
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr9:35543913-35543565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr9:3548010-3547646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 244
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr9:10644023-10643661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr9:9260998-9261403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 304
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr9:20314830-20315203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 73
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr9:3935033-3934633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr9:50003074-50003490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 99
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr9:43493559-43493998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr9:41507231-41506786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr9:649435-648988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
1-446
               

               
Cow position:
               
chr9:26277269-26277707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr9:46669597-46670030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr9:31113769-31114234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 241
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr9:14794473-14794962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 107
               

               
Conread position:
               
1-578
               

               
Cow position:
               
chr9:6549792-6550375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr9:1249382-1248793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr9:59508558-59507975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 150
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr9:826308-825715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
1-604
               

               
Cow position:
               
chr9:56301825-56301218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-616
               

               
Cow position:
               
chr9:2485002-2484381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 239
               

               
Conread position:
               
1-656
               

               
Cow position:
               
chr9:10939339-10939997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 243
               

               
Conread position:
               
1-686
               

               
Cow position:
               
chr9:18539279-18539970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 216
               

               
Conread position:
               
1-687
               

               
Cow position:
               
chr9:51591243-51591938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
1-705
               

               
Cow position:
               
chr9:14002655-14003361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-725
               

               
Cow position:
               
chr9:9198719-9199443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 230
               

               
Conread position:
               
1-740
               

               
Cow position:
               
chr9:62444358-62443621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
1-746
               

               
Cow position:
               
chr9:35747264-35746521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 145
               

               
Conread position:
               
1-750
               

               
Cow position:
               
chr9:52408706-52407946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 193
               

               
Conread position:
               
1-759
               

               
Cow position:
               
chr9:44168205-44168982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
587
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-783
               

               
Cow position:
               
chr9:1998680-1997890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
600
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 234
               

               
Conread position:
               
1-785
               

               
Cow position:
               
chr9:2213757-2214556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
810
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
1-788
               

               
Cow position:
               
chr9:3545443-3546236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
803
               

               
Alignm identity:
               
595
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 124
               

               
Conread position:
               
1-800
               

               
Cow position:
               
chr9:52525773-52526583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
819
               

               
Alignm identity:
               
614
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 111
               

               
Conread position:
               
1-800
               

               
Cow position:
               
chr9:55797489-55796662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 241
               

               
Conread position:
               
1-818
               

               
Cow position:
               
chr9:42902824-42901985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
858
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 165
               

               
Conread position:
               
1-828
               

               
Cow position:
               
chr9:2873089-2873938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
854
               

               
Alignm identity:
               
639
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-838
               

               
Cow position:
               
chr9:10567750-10566892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
658
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
1-840
               

               
Cow position:
               
chr9:26123325-26124193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
889
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 151
               

               
Conread position:
               
1-841
               

               
Cow position:
               
chr9:10856635-10857507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
879
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 243
               

               
Conread position:
               
1-841
               

               
Cow position:
               
chr9:17303357-17302504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
865
               

               
Alignm identity:
               
664
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 241
               

               
Conread position:
               
1-841
               

               
Cow position:
               
chr9:22442104-22442943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
868
               

               
Alignm identity:
               
645
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 136
               

               
Conread position:
               
1-841
               

               
Cow position:
               
chr9:28024430-28025296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
659
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 247
               

               
Conread position:
               
1-841
               

               
Cow position:
               
chr9:54459886-54459026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
866
               

               
Alignm identity:
               
664
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 223
               

               
Conread position:
               
1-843
               

               
Cow position:
               
chr9:34946409-34945546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
874
               

               
Alignm identity:
               
603
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 248
               

               
Conread position:
               
1-847
               

               
Cow position:
               
chr9:13472944-13472103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
863
               

               
Alignm identity:
               
648
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
1-848
               

               
Cow position:
               
chr9:21461100-21461937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
628
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 159
               

               
Conread position:
               
1-848
               

               
Cow position:
               
chr9:23421205-23422078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
887
               

               
Alignm identity:
               
624
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-848
               

               
Cow position:
               
chr9:26100814-26100006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
860
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 29
               

               
Conread position:
               
1-848
               

               
Cow position:
               
chr9:46626928-46627794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
873
               

               
Alignm identity:
               
663
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 213
               

               
Conread position:
               
1-849
               

               
Cow position:
               
chr9:778199-777327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
879
               

               
Alignm identity:
               
663
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
1-849
               

               
Cow position:
               
chr9:2496112-2495257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
874
               

               
Alignm identity:
               
620
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
1-849
               

               
Cow position:
               
chr9:52002464-52001619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
880
               

               
Alignm identity:
               
639
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 79
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:791704-790828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
891
               

               
Alignm identity:
               
634
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 244
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:1071670-1070799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
658
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 239
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:1099209-1100079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
658
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 240
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:1991920-1991069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
648
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:2526904-2527761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
624
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 126
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:2835379-2834516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
646
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 68
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:3061206-3062072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
877
               

               
Alignm identity:
               
663
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:3757216-3756358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
868
               

               
Alignm identity:
               
664
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:3806212-3807079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
653
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 244
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:3998146-3997288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
645
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 241
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:4306454-4305595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
881
               

               
Alignm identity:
               
600
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 254
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:4940884-4940009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
882
               

               
Alignm identity:
               
668
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 239
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:5006588-5007450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
885
               

               
Alignm identity:
               
652
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 225
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:5430082-5430951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
668
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:5453025-5452155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:5534317-5533450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
902
               

               
Alignm identity:
               
637
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 353
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:5627434-5628303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
662
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:6708304-6707433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
877
               

               
Alignm identity:
               
659
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 239
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:6886206-6887063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
642
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 233
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:7104616-7103746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:9015689-9016557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
672
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:13312181-13313042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
662
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:15053267-15052414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
873
               

               
Alignm identity:
               
635
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 240
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:16178210-16179069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
667
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 134
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:17017364-17018239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
880
               

               
Alignm identity:
               
679
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 248
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:18507209-18506344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
658
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:19156669-19155800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
879
               

               
Alignm identity:
               
665
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 176
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:21411927-21412788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
660
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:22655429-22656283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
656
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:26054663-26055515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
648
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:26088387-26087527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
631
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 164
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:27037723-27038598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
882
               

               
Alignm identity:
               
684
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 241
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:28658434-28657572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
672
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:28680815-28681685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
661
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 246
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:30674690-30675559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
659
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:31417889-31417031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
659
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 228
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:31810194-31811062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
669
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 80
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:32971991-32972851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
872
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:33068873-33068009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
887
               

               
Alignm identity:
               
646
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:36845307-36844460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
864
               

               
Alignm identity:
               
635
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 158
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:37158995-37158127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
874
               

               
Alignm identity:
               
667
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:43495749-43496619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 243
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:45876135-45877003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
655
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 201
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:46668183-46667313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
878
               

               
Alignm identity:
               
663
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 148
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:47005357-47006218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
648
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 240
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:47044563-47045432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
661
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:47170661-47171538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
882
               

               
Alignm identity:
               
680
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 240
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:48795677-48794807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
666
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:50840048-50840917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 238
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:54995262-54996108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
624
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:59196470-59197332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
874
               

               
Alignm identity:
               
675
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 250
               

               
Conread position:
               
1-850
               

               
Cow position:
               
chr9:59480233-59479372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
657
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 240
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr9:7005335-7005627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 242
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr9:18569917-18569613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
25, 135
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr9:11157743-11157352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 149
               

               
Conread position:
               
2-587
               

               
Cow position:
               
chr9:56176386-56176977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 233
               

               
Conread position:
               
2-842
               

               
Cow position:
               
chr9:61740424-61739578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
597
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 244
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr9:27782271-27781953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 239
               

               
Conread position:
               
5-468
               

               
Cow position:
               
chr9:1515908-1516371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr9:22437974-22438460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 241
               

               
Conread position:
               
5-507
               

               
Cow position:
               
chr9:34688005-34688488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
5-632
               

               
Cow position:
               
chr9:17301512-17300872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 231
               

               
Conread position:
               
5-795
               

               
Cow position:
               
chr9:2173156-2173960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
596
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 235
               

               
Conread position:
               
5-846
               

               
Cow position:
               
chr9:40143734-40142875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
666
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 69
               

               
Conread position:
               
5-850
               

               
Cow position:
               
chr9:7059443-7058570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
878
               

               
Alignm identity:
               
647
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 236
               

               
Conread position:
               
5-850
               

               
Cow position:
               
chr9:20941076-20941962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
894
               

               
Alignm identity:
               
673
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
5-850
               

               
Cow position:
               
chr9:64026193-64025346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
874
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 181
               

               
Conread position:
               
6-459
               

               
Cow position:
               
chr9:34695867-34696333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 226
               

               
Conread position:
               
7-256
               

               
Cow position:
               
chr9:2806738-2806487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
7-467
               

               
Cow position:
               
chr9:3576649-3576180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
7-492
               

               
Cow position:
               
chr9:2681196-2681664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 176
               

               
Conread position:
               
7-769
               

               
Cow position:
               
chr9:38678750-38679499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 122
               

               
Conread position:
               
7-849
               

               
Cow position:
               
chr9:44203448-44202596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
868
               

               
Alignm identity:
               
658
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 220
               

               
Conread position:
               
7-850
               

               
Cow position:
               
chr9:64012608-64011745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
665
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 237
               

               
Conread position:
               
8-850
               

               
Cow position:
               
chr9:17633100-17633972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
880
               

               
Alignm identity:
               
643
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 67
               

               
Conread position:
               
10-603
               

               
Cow position:
               
chr9:128227-127646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 196
               

               
Conread position:
               
10-850
               

               
Cow position:
               
chr9:1063075-1062211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
870
               

               
Alignm identity:
               
655
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 233
               

               
Conread position:
               
11-431
               

               
Cow position:
               
chr9:26081692-26081271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
11-832
               

               
Cow position:
               
chr9:218490-217647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
850
               

               
Alignm identity:
               
611
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 228
               

               
Conread position:
               
11-840
               

               
Cow position:
               
chr9:9958555-9957718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
852
               

               
Alignm identity:
               
630
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 150
               

               
Conread position:
               
11-850
               

               
Cow position:
               
chr9:6765146-6764286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
868
               

               
Alignm identity:
               
645
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr9:28702047-28702351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
13-850
               

               
Cow position:
               
chr9:12161234-12162081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
866
               

               
Alignm identity:
               
621
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 232
               

               
Conread position:
               
14-409
               

               
Cow position:
               
chr9:2631213-2631597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
20-467
               

               
Cow position:
               
chr9:1850981-1850526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 216
               

               
Conread position:
               
20-767
               

               
Cow position:
               
chr9:17870128-17870900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 224
               

               
Conread position:
               
20-850
               

               
Cow position:
               
chr9:42569850-42570701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
857
               

               
Alignm identity:
               
662
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 224
               

               
Conread position:
               
23-700
               

               
Cow position:
               
chr9:64048929-64049588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 61
               

               
Conread position:
               
23-850
               

               
Cow position:
               
chr9:14045320-14046150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
849
               

               
Alignm identity:
               
636
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 78
               

               
Conread position:
               
24-409
               

               
Cow position:
               
chr9:1727096-1726711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 148
               

               
Conread position:
               
26-847
               

               
Cow position:
               
chr9:56166772-56165950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
847
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 207
               

               
Conread position:
               
27-835
               

               
Cow position:
               
chr9:52037021-52037828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
28-358
               

               
Cow position:
               
chr9:9492711-9492380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
86, 216
               

               
Conread position:
               
37-843
               

               
Cow position:
               
chr9:2856495-2857321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
618
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 202
               

               
Conread position:
               
40-389
               

               
Cow position:
               
chr9:8283554-8283200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 199
               

               
Conread position:
               
42-574
               

               
Cow position:
               
chr9:43667489-43668020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 200
               

               
Conread position:
               
45-225
               

               
Cow position:
               
chr9:1741206-1741019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
50-848
               

               
Cow position:
               
chr9:3074825-3075619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
818
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 180
               

               
Conread position:
               
50-850
               

               
Cow position:
               
chr9:26325409-26326230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
826
               

               
Alignm identity:
               
623
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 190
               

               
Conread position:
               
53-848
               

               
Cow position:
               
chr9:28774572-28773779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
828
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
55-500
               

               
Cow position:
               
chr9:39812984-39813436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 184
               

               
Conread position:
               
61-440
               

               
Cow position:
               
chr9:8655638-8655258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
64-850
               

               
Cow position:
               
chr9:13180584-13181394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
827
               

               
Alignm identity:
               
605
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
69-584
               

               
Cow position:
               
chr9:17008279-17007755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
75-425
               

               
Cow position:
               
chr9:3052290-3051938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
75-850
               

               
Cow position:
               
chr9:28785027-28785827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
615
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 168
               

               
Conread position:
               
79-848
               

               
Cow position:
               
chr9:3960474-3959720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
80-579
               

               
Cow position:
               
chr9:52401653-52402158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 164
               

               
Conread position:
               
84-671
               

               
Cow position:
               
chr9:43226005-43225408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
96-716
               

               
Cow position:
               
chr9:12260648-12260021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
102-428
               

               
Cow position:
               
chr9:36601374-36601707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
103-850
               

               
Cow position:
               
chr9:22569825-22570588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
104-392
               

               
Cow position:
               
chr9:34554442-34554161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
104-711
               

               
Cow position:
               
chr9:15835962-15835341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
107-848
               

               
Cow position:
               
chr9:4128219-4127486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 177
               

               
Conread position:
               
109-846
               

               
Cow position:
               
chr9:35820-35087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 126
               

               
Conread position:
               
110-843
               

               
Cow position:
               
chr9:37174677-37173927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 125
               

               
Conread position:
               
110-850
               

               
Cow position:
               
chr9:6252297-6253049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
111-561
               

               
Cow position:
               
chr9:10325674-10326121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 123
               

               
Conread position:
               
114-323
               

               
Cow position:
               
chr9:1259010-1259219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 125
               

               
Conread position:
               
114-751
               

               
Cow position:
               
chr9:9577541-9578180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
115-304
               

               
Cow position:
               
chr9:42718617-42718806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
115-388
               

               
Cow position:
               
chr9:43845359-43845634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
115-850
               

               
Cow position:
               
chr9:39303820-39303068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 120
               

               
Conread position:
               
117-285
               

               
Cow position:
               
chr9:17061904-17061736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
121-473
               

               
Cow position:
               
chr9:20577610-20577964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
121-764
               

               
Cow position:
               
chr9:46525466-46524827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
127-456
               

               
Cow position:
               
chr9:30737419-30737750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
143-850
               

               
Cow position:
               
chr9:55031276-55031987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
148-491
               

               
Cow position:
               
chr9:24423087-24423432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
150-801
               

               
Cow position:
               
chr9:13220311-13220975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
152-850
               

               
Cow position:
               
chr9:34059863-34059148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
179-459
               

               
Cow position:
               
chr9:6304572-6304294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 52
               

               
Conread position:
               
180-850
               

               
Cow position:
               
chr9:5328545-5327881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 56
               

               
Conread position:
               
180-850
               

               
Cow position:
               
chr9:6365179-6365858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 51
               

               
Conread position:
               
181-409
               

               
Cow position:
               
chr9:9094310-9094535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
152, 55
               

               
Conread position:
               
181-850
               

               
Cow position:
               
chr9:62669747-62669068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 46
               

               
Conread position:
               
182-849
               

               
Cow position:
               
chr9:18071291-18071964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 52
               

               
Conread position:
               
183-848
               

               
Cow position:
               
chr9:20988111-20988776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 36
               

               
Conread position:
               
183-850
               

               
Cow position:
               
chr9:1939227-1938559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 44
               

               
Conread position:
               
190-848
               

               
Cow position:
               
chr9:1404621-1405273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
195-842
               

               
Cow position:
               
chr9:24918471-24917811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 41
               

               
Conread position:
               
198-476
               

               
Cow position:
               
chr9:52036500-52036770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 43
               

               
Conread position:
               
205-850
               

               
Cow position:
               
chr9:38633607-38634264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
212-825
               

               
Cow position:
               
chr9:53776535-53777148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
227-850
               

               
Cow position:
               
chr9:1837804-1838436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
236-766
               

               
Cow position:
               
chr9:45791703-45792246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
236-789
               

               
Cow position:
               
chr9:24874091-24873537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
236-850
               

               
Cow position:
               
chr9:37253259-37253889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
236-850
               

               
Cow position:
               
chr9:54413752-54413135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 45
               

               
Conread position:
               
241-800
               

               
Cow position:
               
chr9:10679065-10678504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
242-828
               

               
Cow position:
               
chr9:51010428-51010989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
243-409
               

               
Cow position:
               
chr9:43579762-43579928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
243-800
               

               
Cow position:
               
chr9:41313179-41312609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
243-838
               

               
Cow position:
               
chr9:50775570-50776171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 39
               

               
Conread position:
               
251-848
               

               
Cow position:
               
chr9:1640125-1640751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
283-848
               

               
Cow position:
               
chr9:18109602-18110184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 272
               

               
Conread position:
               
302-850
               

               
Cow position:
               
chr9:17061436-17060873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
303-621
               

               
Cow position:
               
chr9:23526681-23527005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 68
               
Show alignments to all cow chromosomes.