Cow genome map

Conread name: Utr1-UTR010045E09

Conread position: 1-465
Cow position: chr1:33388045-33388503 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 304
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 14

Conread position: 2-317
Cow position: chr1:40953465-40953762 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 13

Conread position: 3-397
Cow position: chr1:29950558-29950176 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 269
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 132, 93

Conread position: 3-435
Cow position: chr1:86608950-86609370 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 92

Conread position: 3-550
Cow position: chr1:18406441-18405896 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 88

Conread position: 4-465
Cow position: chr1:98783804-98784265 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 168

Conread position: 4-563
Cow position: chr1:69536659-69537211 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 87

Conread position: 4-563
Cow position: chr1:87207661-87207114 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 87

Conread position: 5-159
Cow position: chr1:30023440-30023287 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 84, 0

Conread position: 5-169
Cow position: chr1:67902667-67902508 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 5-285
Cow position: chr1:38387879-38387619 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 249, 21

Conread position: 5-289
Cow position: chr1:89809869-89809587 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 86

Conread position: 5-465
Cow position: chr1:30058302-30058754 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 301
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 142, 41

Conread position: 5-499
Cow position: chr1:99021202-99020711 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 319
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 263, 19

Conread position: 5-548
Cow position: chr1:18014436-18013888 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 353
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 115, 83

Conread position: 5-558
Cow position: chr1:13879888-13880429 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 10

Conread position: 5-561
Cow position: chr1:63501212-63501764 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 19

Conread position: 5-563
Cow position: chr1:13645484-13646026 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 13

Conread position: 5-563
Cow position: chr1:49974440-49973876 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 85

Conread position: 5-563
Cow position: chr1:85781027-85780466 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 85

Conread position: 5-564
Cow position: chr1:30027790-30027236 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 86

Conread position: 5-564
Cow position: chr1:34689094-34689656 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 59

Conread position: 6-137
Cow position: chr1:52172719-52172589 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 6-175
Cow position: chr1:29361760-29361928 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 6-201
Cow position: chr1:87449705-87449899 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 6-225
Cow position: chr1:31396168-31396383 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 84, 0

Conread position: 6-225
Cow position: chr1:43019877-43020093 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 83, 0

Conread position: 6-241
Cow position: chr1:55323767-55323537 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 160, 37

Conread position: 6-265
Cow position: chr1:22864166-22863908 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 6-273
Cow position: chr1:13253679-13253420 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 6-276
Cow position: chr1:5501727-5501996 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 6-314
Cow position: chr1:28722544-28722858 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 198, 81

Conread position: 6-330
Cow position: chr1:6708339-6708019 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 83

Conread position: 6-330
Cow position: chr1:39880489-39880797 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 211
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 290, 9

Conread position: 6-338
Cow position: chr1:40513748-40513418 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 6-349
Cow position: chr1:17942059-17941716 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 82

Conread position: 6-354
Cow position: chr1:62806054-62805707 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 90

Conread position: 6-360
Cow position: chr1:69922711-69922361 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-371
Cow position: chr1:87969103-87969468 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 250
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 187, 89

Conread position: 6-394
Cow position: chr1:25549815-25550198 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-413
Cow position: chr1:85533654-85533253 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 275
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 89, 105

Conread position: 6-422
Cow position: chr1:79920975-79920559 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-503
Cow position: chr1:33895431-33895935 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-523
Cow position: chr1:55775906-55776411 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-530
Cow position: chr1:55276734-55276203 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-536
Cow position: chr1:89740491-89739982 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 89

Conread position: 6-538
Cow position: chr1:33550675-33551207 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 82

Conread position: 6-539
Cow position: chr1:67835386-67834849 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 84

Conread position: 6-547
Cow position: chr1:56489591-56490139 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 84

Conread position: 6-548
Cow position: chr1:42736209-42736751 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 83

Conread position: 6-548
Cow position: chr1:72981019-72981566 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-548
Cow position: chr1:85791444-85791986 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 53

Conread position: 6-549
Cow position: chr1:11292352-11291805 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 84

Conread position: 6-549
Cow position: chr1:17036806-17036256 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-549
Cow position: chr1:20828641-20829190 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-549
Cow position: chr1:28872829-28873374 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-549
Cow position: chr1:33851031-33851578 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-549
Cow position: chr1:56163082-56163627 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 18

Conread position: 6-549
Cow position: chr1:59210382-59209838 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-549
Cow position: chr1:69766217-69766763 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 50

Conread position: 6-549
Cow position: chr1:76623193-76622657 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-549
Cow position: chr1:82564257-82564804 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 13

Conread position: 6-549
Cow position: chr1:82652389-82652954 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 84

Conread position: 6-549
Cow position: chr1:89425342-89425874 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 84

Conread position: 6-549
Cow position: chr1:91898752-91899297 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 85

Conread position: 6-551
Cow position: chr1:76545788-76545237 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 84

Conread position: 6-557
Cow position: chr1:39543523-39544078 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-557
Cow position: chr1:76752898-76752345 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-559
Cow position: chr1:18244637-18244074 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 86

Conread position: 6-562
Cow position: chr1:8554080-8554642 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-562
Cow position: chr1:17012984-17012425 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-562
Cow position: chr1:56194179-56193618 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 90

Conread position: 6-562
Cow position: chr1:62854075-62853527 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 84

Conread position: 6-562
Cow position: chr1:63606031-63605467 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 84

Conread position: 6-562
Cow position: chr1:102435276-102434726 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 84

Conread position: 6-563
Cow position: chr1:1461575-1461018 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 89

Conread position: 6-563
Cow position: chr1:3386254-3385706 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 80

Conread position: 6-563
Cow position: chr1:8824814-8825364 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-563
Cow position: chr1:22000205-21999643 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 85

Conread position: 6-563
Cow position: chr1:28801674-28801086 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 347

Conread position: 6-563
Cow position: chr1:31366326-31365762 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 83

Conread position: 6-563
Cow position: chr1:33711813-33712378 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 17

Conread position: 6-563
Cow position: chr1:38414560-38415112 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 52

Conread position: 6-563
Cow position: chr1:40307819-40308372 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 84

Conread position: 6-563
Cow position: chr1:56144578-56144024 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 90

Conread position: 6-563
Cow position: chr1:57367380-57366818 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr1:57567702-57568266 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr1:62244894-62244333 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 37

Conread position: 6-563
Cow position: chr1:68607796-68607229 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 84

Conread position: 6-563
Cow position: chr1:69402744-69403294 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr1:71562823-71562259 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr1:72187119-72186562 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 82

Conread position: 6-563
Cow position: chr1:72656735-72657301 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 13

Conread position: 6-563
Cow position: chr1:79336052-79335490 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-563
Cow position: chr1:79457215-79456658 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr1:82918906-82918350 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 94

Conread position: 6-563
Cow position: chr1:86699466-86698903 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 95

Conread position: 6-563
Cow position: chr1:88130510-88131085 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 82

Conread position: 6-563
Cow position: chr1:88635130-88635685 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 9

Conread position: 6-563
Cow position: chr1:89770930-89770370 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 70

Conread position: 6-563
Cow position: chr1:89899949-89899391 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 44

Conread position: 6-563
Cow position: chr1:93854272-93854835 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 90

Conread position: 6-563
Cow position: chr1:97123585-97124122 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 44

Conread position: 6-563
Cow position: chr1:97226948-97226397 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 89

Conread position: 6-563
Cow position: chr1:101149595-101150147 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 83

Conread position: 6-564
Cow position: chr1:25887391-25886847 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 46

Conread position: 6-564
Cow position: chr1:54366065-54365516 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 55

Conread position: 6-566
Cow position: chr1:52233347-52232799 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 17

Conread position: 6-566
Cow position: chr1:58335588-58336151 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-566
Cow position: chr1:61308754-61309322 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-566
Cow position: chr1:100597630-100597054 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 84

Conread position: 6-567
Cow position: chr1:18880633-18880074 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 84

Conread position: 6-567
Cow position: chr1:62925365-62925932 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-567
Cow position: chr1:87244551-87245129 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 86

Conread position: 6-567
Cow position: chr1:99349266-99348719 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 89

Conread position: 6-568
Cow position: chr1:42290144-42290703 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 194

Conread position: 7-563
Cow position: chr1:25180278-25179716 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 83

Conread position: 7-566
Cow position: chr1:59933309-59933855 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 69

Conread position: 8-523
Cow position: chr1:56856294-56856824 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 333
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 212, 87

Conread position: 8-557
Cow position: chr1:101858226-101857678 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 48

Conread position: 10-299
Cow position: chr1:21541318-21541600 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 189
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 10-488
Cow position: chr1:53046025-53045558 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 80

Conread position: 10-549
Cow position: chr1:80359410-80358880 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 80

Conread position: 10-562
Cow position: chr1:86548375-86547821 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 80

Conread position: 10-564
Cow position: chr1:91718878-91718323 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 80

Conread position: 10-565
Cow position: chr1:5318520-5319059 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 15

Conread position: 10-570
Cow position: chr1:67286246-67286809 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 80

Conread position: 11-369
Cow position: chr1:59674246-59674594 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 11-411
Cow position: chr1:77163538-77163922 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 271
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 351, 86

Conread position: 11-505
Cow position: chr1:102548990-102549502 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 38

Conread position: 12-563
Cow position: chr1:57656316-57656858 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 78

Conread position: 12-564
Cow position: chr1:52918856-52918313 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 31

Conread position: 13-564
Cow position: chr1:31331029-31330478 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 85

Conread position: 15-380
Cow position: chr1:82407579-82407218 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 226, 75

Conread position: 15-506
Cow position: chr1:69287796-69287312 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 49

Conread position: 15-546
Cow position: chr1:40684929-40684393 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 75

Conread position: 15-561
Cow position: chr1:61738743-61738207 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 353
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 37, 82

Conread position: 15-563
Cow position: chr1:79637166-79636620 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 68

Conread position: 15-564
Cow position: chr1:98661535-98661001 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 86

Conread position: 15-567
Cow position: chr1:40053116-40053674 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 73

Conread position: 18-549
Cow position: chr1:56722916-56723455 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 75

Conread position: 25-557
Cow position: chr1:45097479-45098003 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 68

Conread position: 29-348
Cow position: chr1:35156079-35155773 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 61

Conread position: 29-564
Cow position: chr1:72136418-72136953 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 30-327
Cow position: chr1:32361337-32361047 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 248, 66

Conread position: 30-496
Cow position: chr1:21356833-21356393 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 304
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 271, 68

Conread position: 31-413
Cow position: chr1:28276418-28276797 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 259
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 205, 64

Conread position: 33-547
Cow position: chr1:88396481-88395968 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 329
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 269, 62

Conread position: 34-549
Cow position: chr1:21087197-21087714 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 25

Conread position: 37-253
Cow position: chr1:85881525-85881741 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 194, 52

Conread position: 39-536
Cow position: chr1:52359491-52358990 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 51

Conread position: 41-506
Cow position: chr1:77112651-77112194 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 55

Conread position: 42-563
Cow position: chr1:91893321-91892809 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 9

Conread position: 44-563
Cow position: chr1:72080562-72081093 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 46

Conread position: 46-563
Cow position: chr1:78289673-78290178 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 44

Conread position: 46-563
Cow position: chr1:79109089-79109586 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 53

Conread position: 52-548
Cow position: chr1:84149213-84149718 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 38

Conread position: 59-549
Cow position: chr1:30283731-30283242 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 31

Conread position: 61-567
Cow position: chr1:28710723-28711235 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 29

Conread position: 69-401
Cow position: chr1:73009615-73009940 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 293, 83

Conread position: 70-549
Cow position: chr1:13450024-13450507 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 116

Conread position: 75-380
Cow position: chr1:15347764-15347457 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 15

Conread position: 76-412
Cow position: chr1:32836465-32836788 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 215
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 285, 19

Conread position: 81-460
Cow position: chr1:23050667-23051047 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 15

Conread position: 83-285
Cow position: chr1:79884997-79884800 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 12, 0

Conread position: 83-558
Cow position: chr1:37419916-37419463 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 12

Conread position: 88-537
Cow position: chr1:12062363-12061908 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 25

Conread position: 89-531
Cow position: chr1:99910785-99911241 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 263

Conread position: 93-451
Cow position: chr1:51742568-51742931 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 233
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 103, 38

Conread position: 93-560
Cow position: chr1:39482143-39481671 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 209

Conread position: 100-422
Cow position: chr1:44101899-44101580 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 202, 52

Conread position: 103-555
Cow position: chr1:11863388-11862952 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 60

Conread position: 107-534
Cow position: chr1:48245663-48246099 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 238

Conread position: 116-561
Cow position: chr1:36919768-36920232 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 301
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 59, 71

Conread position: 135-515
Cow position: chr1:15025777-15026152 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 167, 132

Conread position: 160-549
Cow position: chr1:60339210-60339606 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 185

Conread position: 161-493
Cow position: chr1:32342169-32341831 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 201, 183

Conread position: 163-549
Cow position: chr1:29362204-29362597 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 182

Conread position: 165-477
Cow position: chr1:77117681-77117358 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 137, 180

Conread position: 168-563
Cow position: chr1:82924265-82923865 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 148

Conread position: 177-493
Cow position: chr1:20988874-20989200 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 119, 90

Conread position: 177-568
Cow position: chr1:67901996-67901610 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 182-564
Cow position: chr1:89479248-89479620 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 96

Conread position: 185-563
Cow position: chr1:73071127-73070742 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 160

Conread position: 200-549
Cow position: chr1:40574160-40574514 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 145

Conread position: 201-563
Cow position: chr1:58884122-58883753 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 144

Conread position: 205-328
Cow position: chr1:50643006-50643128 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 211-562
Cow position: chr1:28722828-28723187 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 134

Conread position: 218-562
Cow position: chr1:94659654-94659995 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 13

Conread position: 231-489
Cow position: chr1:88270620-88270366 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 131, 71

Conread position: 232-567
Cow position: chr1:31396667-31397009 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 120

Conread position: 237-560
Cow position: chr1:69060503-69060797 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 20

Conread position: 242-562
Cow position: chr1:55323068-55322744 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 31

Conread position: 247-549
Cow position: chr1:85881995-85882302 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 105

Conread position: 256-561
Cow position: chr1:55157571-55157275 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 84

Conread position: 264-564
Cow position: chr1:102556065-102556362 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 114, 27

Conread position: 279-549
Cow position: chr1:82913120-82912843 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 77

Conread position: 294-549
Cow position: chr1:95239409-95239670 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 57

Conread position: 306-491
Cow position: chr1:45023536-45023347 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 34

Conread position: 312-563
Cow position: chr1:5501991-5502248 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 51, 39

Conread position: 319-523
Cow position: chr1:40953967-40954176 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 24

Conread position: 352-562
Cow position: chr1:40513278-40513068 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 20, 15

Conread position: 360-564
Cow position: chr1:24650863-24651071 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 59

Conread position: 371-549
Cow position: chr1:65386446-65386628 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 42

Conread position: 382-564
Cow position: chr1:94253047-94253234 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 49, 23

Conread position: 386-549
Cow position: chr1:9382411-9382247 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 19

Conread position: 391-564
Cow position: chr1:21720027-21720204 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 14

Conread position: 408-564
Cow position: chr1:72039195-72039033 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 409-567
Cow position: chr1:18027615-18027450 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 435-548
Cow position: chr1:5355312-5355426 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 437-566
Cow position: chr1:87516096-87515966 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.