Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 5-252 |
| Cow position: | chr12:21197532-21197772 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 5-496 |
| Cow position: | chr12:10483744-10484225 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 5-562 |
| Cow position: | chr12:25101359-25100799 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 85 |
| Conread position: | 5-563 |
| Cow position: | chr12:28766325-28765756 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 6-173 |
| Cow position: | chr12:601350-601184 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 6-296 |
| Cow position: | chr12:48404750-48405033 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 6-469 |
| Cow position: | chr12:21207398-21207862 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 84 |
| Conread position: | 6-469 |
| Cow position: | chr12:26141514-26141982 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-519 |
| Cow position: | chr12:15951555-15951044 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 89 |
| Conread position: | 6-539 |
| Cow position: | chr12:3360614-3361143 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 50 |
| Conread position: | 6-549 |
| Cow position: | chr12:21426397-21426943 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr12:32653248-32653793 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 92 |
| Conread position: | 6-549 |
| Cow position: | chr12:37558260-37558805 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-549 |
| Cow position: | chr12:43031682-43031136 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-557 |
| Cow position: | chr12:2499-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 89 |
| Conread position: | 6-557 |
| Cow position: | chr12:21254955-21254399 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 84 |
| Conread position: | 6-562 |
| Cow position: | chr12:252356-251796 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 84 |
| Conread position: | 6-562 |
| Cow position: | chr12:1402194-1402752 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-562 |
| Cow position: | chr12:22206044-22205486 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 77 |
| Conread position: | 6-562 |
| Cow position: | chr12:27933245-27932683 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 90 |
| Conread position: | 6-563 |
| Cow position: | chr12:6406946-6406388 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 83 |
| Conread position: | 6-563 |
| Cow position: | chr12:8310885-8311444 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 6-563 |
| Cow position: | chr12:11097942-11098505 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr12:14662910-14662370 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 84 |
| Conread position: | 6-563 |
| Cow position: | chr12:20998420-20997870 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 6-563 |
| Cow position: | chr12:42860114-42859564 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 83 |
| Conread position: | 6-563 |
| Cow position: | chr12:45261307-45261886 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 6-566 |
| Cow position: | chr12:21941480-21942036 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 81 |
| Conread position: | 7-567 |
| Cow position: | chr12:8678417-8677853 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 83 |
| Conread position: | 9-563 |
| Cow position: | chr12:22332327-22332887 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 10 |
| Conread position: | 10-179 |
| Cow position: | chr12:2839885-2839723 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 10-563 |
| Cow position: | chr12:21901652-21902202 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 20 |
| Conread position: | 11-563 |
| Cow position: | chr12:2282252-2282809 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 12-427 |
| Cow position: | chr12:16326438-16326819 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 18-563 |
| Cow position: | chr12:21499831-21500365 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 30-514 |
| Cow position: | chr12:17975278-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 337, 65 |
| Conread position: | 34-462 |
| Cow position: | chr12:8982685-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 62 |
| Conread position: | 44-561 |
| Cow position: | chr12:21227708-21227189 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 252, 8 |
| Conread position: | 84-563 |
| Cow position: | chr12:26947204-26946727 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 181 |
| Conread position: | 89-253 |
| Cow position: | chr12:42420338-42420176 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 100-463 |
| Cow position: | chr12:347617-347990 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 112, 12 |
| Conread position: | 134-539 |
| Cow position: | chr12:3632427-3632025 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 162, 144 |
| Conread position: | 258-531 |
| Cow position: | chr12:2838903-2838624 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 263-558 |
| Cow position: | chr12:18501002-18501290 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 284-537 |
| Cow position: | chr12:21197935-21198197 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 316-562 |
| Cow position: | chr12:33986172-33986424 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 357-563 |
| Cow position: | chr12:5861206-5861416 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 16, 49 |
Show alignments to all cow chromosomes.