Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 5-239 |
| Cow position: | chr13:3058514-3058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 5-263 |
| Cow position: | chr13:47859932-47860183 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 229, 63 |
| Conread position: | 5-361 |
| Cow position: | chr13:34868248-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 85 |
| Conread position: | 5-523 |
| Cow position: | chr13:2305982-2306496 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 86 |
| Conread position: | 5-550 |
| Cow position: | chr13:34911889-34911350 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 5-562 |
| Cow position: | chr13:4872558-4873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 85 |
| Conread position: | 5-563 |
| Cow position: | chr13:33825249-33824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 90 |
| Conread position: | 5-564 |
| Cow position: | chr13:34936614-34937191 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 212 |
| Conread position: | 6-211 |
| Cow position: | chr13:13046340-13046141 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 6-258 |
| Cow position: | chr13:4481956-4482201 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 6-300 |
| Cow position: | chr13:30237650-30237939 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 196 |
| Conread position: | 6-340 |
| Cow position: | chr13:32544428-32544753 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 8 |
| Conread position: | 6-404 |
| Cow position: | chr13:48356806-48357184 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 296, 85 |
| Conread position: | 6-473 |
| Cow position: | chr13:30245254-30244781 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-515 |
| Cow position: | chr13:33336843-33336348 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 83 |
| Conread position: | 6-538 |
| Cow position: | chr13:6668644-6668106 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 82 |
| Conread position: | 6-539 |
| Cow position: | chr13:2908964-2908431 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 89 |
| Conread position: | 6-549 |
| Cow position: | chr13:2297316-2296783 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 32 |
| Conread position: | 6-549 |
| Cow position: | chr13:2389314-2388790 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 6-549 |
| Cow position: | chr13:9043990-9044528 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 84 |
| Conread position: | 6-549 |
| Cow position: | chr13:17307960-17308503 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 90 |
| Conread position: | 6-549 |
| Cow position: | chr13:31734601-31734057 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 84 |
| Conread position: | 6-549 |
| Cow position: | chr13:50108946-50109490 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-558 |
| Cow position: | chr13:54284072-54284607 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 34 |
| Conread position: | 6-559 |
| Cow position: | chr13:34187208-34186649 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 89 |
| Conread position: | 6-562 |
| Cow position: | chr13:32738339-32737781 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 6-563 |
| Cow position: | chr13:3276639-3277196 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 9 |
| Conread position: | 6-563 |
| Cow position: | chr13:4940566-4941130 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 82 |
| Conread position: | 6-563 |
| Cow position: | chr13:15924903-15924342 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 89 |
| Conread position: | 6-563 |
| Cow position: | chr13:30657481-30656935 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 90 |
| Conread position: | 6-563 |
| Cow position: | chr13:31612856-31612294 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr13:34042885-34042327 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-564 |
| Cow position: | chr13:15521034-15520472 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-564 |
| Cow position: | chr13:20542881-20542332 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 6-565 |
| Cow position: | chr13:34143177-34142614 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 85 |
| Conread position: | 6-565 |
| Cow position: | chr13:34326196-34325631 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 82 |
| Conread position: | 6-566 |
| Cow position: | chr13:1593675-1593110 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 84 |
| Conread position: | 6-567 |
| Cow position: | chr13:31832088-31832643 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 84 |
| Conread position: | 6-567 |
| Cow position: | chr13:62328102-62327536 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 90 |
| Conread position: | 6-571 |
| Cow position: | chr13:21840715-21840144 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 7-154 |
| Cow position: | chr13:32606693-32606547 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 7-423 |
| Cow position: | chr13:5718471-5718864 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 8-339 |
| Cow position: | chr13:3541778-3541450 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 8-407 |
| Cow position: | chr13:30302554-30302946 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 48 |
| Conread position: | 8-563 |
| Cow position: | chr13:34692645-34693207 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 37 |
| Conread position: | 10-169 |
| Cow position: | chr13:32525261-32525103 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 10-505 |
| Cow position: | chr13:60701791-60701314 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 10-549 |
| Cow position: | chr13:32986563-32986029 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 80 |
| Conread position: | 10-563 |
| Cow position: | chr13:33928075-33927545 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 85 |
| Conread position: | 15-361 |
| Cow position: | chr13:2232148-2232493 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 80 |
| Conread position: | 15-469 |
| Cow position: | chr13:30140482-30140942 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 76 |
| Conread position: | 15-560 |
| Cow position: | chr13:31560682-31561226 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 52 |
| Conread position: | 15-562 |
| Cow position: | chr13:3654822-3654283 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 75 |
| Conread position: | 25-563 |
| Cow position: | chr13:35756739-35757283 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 65 |
| Conread position: | 31-549 |
| Cow position: | chr13:13324262-13324777 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 59 |
| Conread position: | 35-567 |
| Cow position: | chr13:56730764-56730241 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 21 |
| Conread position: | 70-549 |
| Cow position: | chr13:49973226-49973712 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 20 |
| Conread position: | 71-512 |
| Cow position: | chr13:23003971-23003527 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 19 |
| Conread position: | 73-561 |
| Cow position: | chr13:22186172-22185699 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 322 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 229, 23 |
| Conread position: | 105-562 |
| Cow position: | chr13:35030125-35030592 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 162 |
| Conread position: | 115-359 |
| Cow position: | chr13:49554046-49554292 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 124-558 |
| Cow position: | chr13:30063730-30064159 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 71 |
| Conread position: | 137-564 |
| Cow position: | chr13:34767670-34767252 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 94 |
| Conread position: | 149-390 |
| Cow position: | chr13:15451863-15451635 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 153, 102 |
| Conread position: | 166-550 |
| Cow position: | chr13:3567423-3567823 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 231-427 |
| Cow position: | chr13:10114948-10114753 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 71, 116 |
| Conread position: | 235-533 |
| Cow position: | chr13:47230279-47229975 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 250-536 |
| Cow position: | chr13:4483525-4483809 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 6, 54 |
| Conread position: | 269-560 |
| Cow position: | chr13:46732479-46732189 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 291-567 |
| Cow position: | chr13:4178888-4178605 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 360-549 |
| Cow position: | chr13:3058277-3058082 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 360-549 |
| Cow position: | chr13:60466171-60466365 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 391-549 |
| Cow position: | chr13:34868606-34868770 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 403-570 |
| Cow position: | chr13:676752-676925 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 430-564 |
| Cow position: | chr13:15451648-15451515 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 112 |
Show alignments to all cow chromosomes.