Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 4-521 |
| Cow position: | chr17:249508-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 44 |
| Conread position: | 4-549 |
| Cow position: | chr17:228716-228172 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 86 |
| Conread position: | 4-564 |
| Cow position: | chr17:16418251-16417688 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 208, 22 |
| Conread position: | 5-251 |
| Cow position: | chr17:2737964-2738209 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 5-531 |
| Cow position: | chr17:16859970-16859450 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 85 |
| Conread position: | 5-563 |
| Cow position: | chr17:2173463-2174028 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 281 |
| Conread position: | 5-563 |
| Cow position: | chr17:23857446-23856884 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 86 |
| Conread position: | 6-271 |
| Cow position: | chr17:11782958-11783222 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 6-287 |
| Cow position: | chr17:2579148-2579425 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 6-396 |
| Cow position: | chr17:15322418-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 83 |
| Conread position: | 6-423 |
| Cow position: | chr17:22160503-22160921 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-458 |
| Cow position: | chr17:14308717-14308269 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 6-473 |
| Cow position: | chr17:24780635-24781108 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-546 |
| Cow position: | chr17:9653862-9653323 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-548 |
| Cow position: | chr17:43988125-43988668 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 82 |
| Conread position: | 6-549 |
| Cow position: | chr17:1383224-1382678 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr17:2261697-2262238 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr17:8208697-8209242 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr17:15435380-15435927 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 12 |
| Conread position: | 6-549 |
| Cow position: | chr17:16889714-16890259 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 25 |
| Conread position: | 6-549 |
| Cow position: | chr17:20666139-20665590 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-550 |
| Cow position: | chr17:20183639-20183097 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 6-557 |
| Cow position: | chr17:1879679-1880238 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 85 |
| Conread position: | 6-560 |
| Cow position: | chr17:44853341-44852786 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 6-561 |
| Cow position: | chr17:15143783-15143219 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 6-561 |
| Cow position: | chr17:15157372-15156816 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 83 |
| Conread position: | 6-562 |
| Cow position: | chr17:4081240-4081777 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 85 |
| Conread position: | 6-562 |
| Cow position: | chr17:6089574-6089012 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-562 |
| Cow position: | chr17:24633544-24634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-563 |
| Cow position: | chr17:3643249-3642686 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr17:4059694-4060249 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 6-563 |
| Cow position: | chr17:11088134-11087574 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr17:13857186-13856616 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 84 |
| Conread position: | 6-563 |
| Cow position: | chr17:13929255-13929818 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr17:15849986-15850547 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 29 |
| Conread position: | 6-563 |
| Cow position: | chr17:18104093-18103535 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr17:19269777-19269216 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 6-563 |
| Cow position: | chr17:22429894-22429338 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 17 |
| Conread position: | 6-564 |
| Cow position: | chr17:152877-152325 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 38 |
| Conread position: | 6-564 |
| Cow position: | chr17:4294965-4295494 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 92 |
| Conread position: | 6-564 |
| Cow position: | chr17:14217437-14216871 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-564 |
| Cow position: | chr17:14325906-14325362 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 82 |
| Conread position: | 6-566 |
| Cow position: | chr17:20401270-20401814 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 6-567 |
| Cow position: | chr17:2286964-2287540 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 206 |
| Conread position: | 6-567 |
| Cow position: | chr17:25737251-25737818 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 78 |
| Conread position: | 7-137 |
| Cow position: | chr17:32024607-32024479 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 7-563 |
| Cow position: | chr17:27345396-27345948 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 41 |
| Conread position: | 8-301 |
| Cow position: | chr17:2146801-2147082 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 276, 11 |
| Conread position: | 8-489 |
| Cow position: | chr17:39933281-39933731 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 20 |
| Conread position: | 10-297 |
| Cow position: | chr17:40803988-40804270 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 10-334 |
| Cow position: | chr17:28109678-28110002 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 53 |
| Conread position: | 10-367 |
| Cow position: | chr17:1284166-1283841 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 10-549 |
| Cow position: | chr17:23324850-23324318 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 80 |
| Conread position: | 10-562 |
| Cow position: | chr17:2248990-2248435 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 80 |
| Conread position: | 10-567 |
| Cow position: | chr17:35591806-35592368 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 85 |
| Conread position: | 12-536 |
| Cow position: | chr17:2587929-2588426 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 83 |
| Conread position: | 15-563 |
| Cow position: | chr17:14893759-14894303 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 30 |
| Conread position: | 15-564 |
| Cow position: | chr17:6002414-6001867 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 15-564 |
| Cow position: | chr17:15370674-15371198 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 43 |
| Conread position: | 18-522 |
| Cow position: | chr17:4286695-4287187 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 91 |
| Conread position: | 18-538 |
| Cow position: | chr17:1658958-1658441 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 77 |
| Conread position: | 30-297 |
| Cow position: | chr17:3710448-3710184 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 239, 58 |
| Conread position: | 30-563 |
| Cow position: | chr17:1946587-1947119 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 30-563 |
| Cow position: | chr17:18185913-18185385 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 61 |
| Conread position: | 44-462 |
| Cow position: | chr17:4671820-4672231 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 228, 112 |
| Conread position: | 84-563 |
| Cow position: | chr17:6259510-6259994 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 6 |
| Conread position: | 93-563 |
| Cow position: | chr17:22131907-22132378 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 98 |
| Conread position: | 94-565 |
| Cow position: | chr17:20088056-20087594 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 122 |
| Conread position: | 150-567 |
| Cow position: | chr17:18027027-18026603 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 195 |
| Conread position: | 158-533 |
| Cow position: | chr17:2555861-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 187 |
| Conread position: | 233-328 |
| Cow position: | chr17:602695-602599 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 245-562 |
| Cow position: | chr17:2579457-2579764 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 248-549 |
| Cow position: | chr17:181191-181499 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 104 |
| Conread position: | 263-480 |
| Cow position: | chr17:38872917-38873145 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 93 |
| Conread position: | 271-564 |
| Cow position: | chr17:31199792-31199513 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 292-559 |
| Cow position: | chr17:2147050-2147319 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 23 |
| Conread position: | 293-562 |
| Cow position: | chr17:40804689-40804966 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 320-560 |
| Cow position: | chr17:602523-602291 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 348-508 |
| Cow position: | chr17:26205879-26205712 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 386-549 |
| Cow position: | chr17:43952593-43952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 386-563 |
| Cow position: | chr17:15323215-15323395 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 387-547 |
| Cow position: | chr17:31768069-31767905 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 394-562 |
| Cow position: | chr17:22557599-22557771 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 406-549 |
| Cow position: | chr17:34156115-34156264 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.